cytoscape
Class CyMain

java.lang.Object
  cytoscape.CyMain

All Implemented Interfaces:

cytoscape.init.CyInitParams

public class CyMain

extends Object

implements cytoscape.init.CyInitParams

This is the main startup class for Cytoscape. This parses the command line and implements CyInitParams so that it can be used to initialize cytoscape.

Field Summary

Fields inherited from interface cytoscape.init.CyInitParams

EMBEDDED_WINDOW, ERROR, GUI, LIBRARY, TEXT

Constructor Summary

CyMain(String[] args)

Method Summary

String[]	getArgs()
List	getEdgeAttributeFiles()
List	getExpressionFiles()
List	getGraphFiles()
int	getMode()
List	getNodeAttributeFiles()
List	getPlugins()
Properties	getProps()
String	getSessionFile()
Properties	getVizProps()
static void	main(String[] args)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CyMain

public CyMain(String[] args)
       throws Exception

Method Detail

main

public static void main(String[] args)
                 throws Exception

Throws:

Exception

getProps

public Properties getProps()

Specified by:

getProps in interface cytoscape.init.CyInitParams

getVizProps

public Properties getVizProps()

Specified by:

getVizProps in interface cytoscape.init.CyInitParams

getGraphFiles

public List getGraphFiles()

Specified by:

getGraphFiles in interface cytoscape.init.CyInitParams

getEdgeAttributeFiles

public List getEdgeAttributeFiles()

Specified by:

getEdgeAttributeFiles in interface cytoscape.init.CyInitParams

getNodeAttributeFiles

public List getNodeAttributeFiles()

Specified by:

getNodeAttributeFiles in interface cytoscape.init.CyInitParams

getExpressionFiles

public List getExpressionFiles()

Specified by:

getExpressionFiles in interface cytoscape.init.CyInitParams

getPlugins

public List getPlugins()

Specified by:

getPlugins in interface cytoscape.init.CyInitParams

getSessionFile

public String getSessionFile()

Specified by:

getSessionFile in interface cytoscape.init.CyInitParams

getMode

public int getMode()

Specified by:

getMode in interface cytoscape.init.CyInitParams

getArgs

public String[] getArgs()

Specified by:

getArgs in interface cytoscape.init.CyInitParams