cytoscape
Class CyProject

java.lang.Object
  cytoscape.CyProject

Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.

public class CyProject

extends Object

This class is constructed from a project file, and contains string values associated with various meaningful variable names that identify the component of a CyNetwork object or various customization options. See the documentation for the readProjectFile method for the recognized file formats.

Constructor Summary

CyProject(String fileLocation)
Deprecated. Constructs a Project object by reading the file at the supplied location, by calling readProjectFile with the argument.

Method Summary

String	getBioDataDirectory() Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.
boolean	getCanonicalize() Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.
String	getDefaultLayoutStrategy() Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.
String	getDefaultSpeciesName() Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.
String[]	getEdgeAttributeFilenames() Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.
String	getExpressionFilename() Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.
String	getGeometryFilename() Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.
String	getInteractionsFilename() Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.
String[]	getNodeAttributeFilenames() Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.
int	getNumberOfEdgeAttributeFiles() Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.
int	getNumberOfNodeAttributeFiles() Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.
String[]	getOtherArgs() Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.
String	getProjectFilename() Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.
String	getProjectPropsFileName() Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.
String	getProjectVizmapPropsFileName() Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CyProject

public CyProject(String fileLocation)

Deprecated.

Constructs a Project object by reading the file at the supplied location, by calling readProjectFile with the argument.

Method Detail

getProjectFilename

public String getProjectFilename()

Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.

getInteractionsFilename

public String getInteractionsFilename()

Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.

getGeometryFilename

public String getGeometryFilename()

Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.

getExpressionFilename

public String getExpressionFilename()

Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.

getNumberOfNodeAttributeFiles

public int getNumberOfNodeAttributeFiles()

Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.

getNumberOfEdgeAttributeFiles

public int getNumberOfEdgeAttributeFiles()

Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.

getNodeAttributeFilenames

public String[] getNodeAttributeFilenames()

Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.

getEdgeAttributeFilenames

public String[] getEdgeAttributeFilenames()

Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.

getBioDataDirectory

public String getBioDataDirectory()

Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.

getDefaultSpeciesName

public String getDefaultSpeciesName()

Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.

getDefaultLayoutStrategy

public String getDefaultLayoutStrategy()

Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.

getProjectPropsFileName

public String getProjectPropsFileName()

Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.

getProjectVizmapPropsFileName

public String getProjectVizmapPropsFileName()

Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.

getCanonicalize

public boolean getCanonicalize()

Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.

getOtherArgs

public String[] getOtherArgs()

Deprecated. Will be removed October 2006. CyProject is not used in any way in the core. Cytoscape Sessions now encapsulate all of this functionality.