cytoscape.data.ontology
Class GOTerm

java.lang.Object
  org.biojava.utils.AbstractChangeable
      cytoscape.data.ontology.OntologyTerm
          cytoscape.data.ontology.GOTerm

All Implemented Interfaces:

org.biojava.bio.Annotatable, org.biojava.ontology.OntologyTerm, org.biojava.ontology.Term, org.biojava.utils.Changeable

public class GOTerm
extends OntologyTerm

A Gene Ontology term. This class is an extended version of normal ontology.

Author:

kono

Nested Class Summary

Nested classes/interfaces inherited from class cytoscape.data.ontology.OntologyTerm

OntologyTerm.SynonymType

Nested classes/interfaces inherited from interface org.biojava.ontology.OntologyTerm

org.biojava.ontology.OntologyTerm.Impl

Nested classes/interfaces inherited from interface org.biojava.bio.Annotatable

org.biojava.bio.Annotatable.AnnotationForwarder

Field Summary

Fields inherited from interface org.biojava.ontology.Term

ONTOLOGY

Fields inherited from interface org.biojava.bio.Annotatable

ANNOTATION

Constructor Summary

GOTerm(String id, String termName, String ontologyName, String description)

Method Summary

Map	getCrossReferences()
String	getDescription() Return a human-readable description of this term, or the empty string if none is available.
String	getFullName()
String	getNameSpace()
String	getType()

Methods inherited from class cytoscape.data.ontology.OntologyTerm

addSynonym, addSynonym, getAnnotation, getName, getOntology, getSynonyms, removeSynonym

Methods inherited from class org.biojava.utils.AbstractChangeable

addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.biojava.utils.Changeable

addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener

Constructor Detail

GOTerm

public GOTerm(String id,
              String termName,
              String ontologyName,
              String description)

Method Detail

getNameSpace

public String getNameSpace()

getCrossReferences

public Map getCrossReferences()

getFullName

public String getFullName()

getDescription

public String getDescription()

Description copied from class: OntologyTerm

Return a human-readable description of this term, or the empty string if none is available.

Specified by:

getDescription in interface org.biojava.ontology.Term

Overrides:

getDescription in class OntologyTerm

getType

public String getType()