cytoscape.data.readers
Class GMLTree

java.lang.Object
  cytoscape.data.readers.GMLTree

public class GMLTree
extends Object

This class wraps around GMLNode and provides various methods for constructing a tree structure given other data.

Field Summary

static int	DOUBLE When getting a vector, used to specify the type for the contained objects
static int	GMLTREE When getting a vector, used to specify the type for the contained objects
static int	INTEGER When getting a vector, used to specify the type for the contained objects
static int	STRING When getting a vector, used to specify the type for the contained objects

Constructor Summary

GMLTree()
Create an empty GMLTree

GMLTree(CyNetworkView networkView)
Create a GMLTree from the information contained in this GraphView.

GMLTree(GMLNode init)

GMLTree(String filename)
Create a GMLTree from data contained in a file

GMLTree(String text, boolean zip_entry)

Method Summary

String	getColorHexString(Color c) Get the String representation of the 6 character hexidecimal RGB values i.e.
Vector	getVector(String[] keys, int type) Return a vector of information stored in gmlNodes
Vector	getVector(String keys, String delim, int type) Deprecated. use anonymous String arrays instead
String	toString() Get string representation

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

STRING

public static int STRING

When getting a vector, used to specify the type for the contained objects

DOUBLE

public static int DOUBLE

When getting a vector, used to specify the type for the contained objects

INTEGER

public static int INTEGER

When getting a vector, used to specify the type for the contained objects

GMLTREE

public static int GMLTREE

When getting a vector, used to specify the type for the contained objects

Constructor Detail

GMLTree

public GMLTree()

Create an empty GMLTree

GMLTree

public GMLTree(GMLNode init)

GMLTree

public GMLTree(CyNetworkView networkView)

Create a GMLTree from the information contained in this GraphView. Currently this only concerns itself with x,y position information.

Parameters:

myView - the GraphView used to create the GMLTree

GMLTree

public GMLTree(String filename)

Create a GMLTree from data contained in a file

Parameters:

filename - The name of the file used to create this GMLTree

GMLTree

public GMLTree(String text,
               boolean zip_entry)

Method Detail

toString

public String toString()

Get string representation

Overrides:

toString in class Object

Returns:

string representation

getColorHexString

public String getColorHexString(Color c)

Get the String representation of the 6 character hexidecimal RGB values i.e. #ff000a

Parameters:

Color - The color to be converted

getVector

public Vector getVector(String keys,
                        String delim,
                        int type)

Deprecated. use anonymous String arrays instead

Return a vector of information stored in gmlNodes

Parameters:

keys - A string representing a delimited sequence of keys which are used to look up values in the tree.

delim - A string representing the delimiter used in keys

type - The type of vector to return. See public static values for specifying type

Returns:

A vector. The type of this vector is determined by type

getVector

public Vector getVector(String[] keys,
                        int type)

Return a vector of information stored in gmlNodes

Parameters:

keys - a string array containing the sequence of keys used to lookup the values in the tree

type - The type fo vector to return. See public static values for specifiying type

Returns:

A vector. The type of the objects in the vector is determined by type