cytoscape.data.servers
Interface BioDataServerInterface

All Superinterfaces:

Remote

All Known Implementing Classes:

BioDataServerRmi

public interface BioDataServerInterface
extends Remote

Method Summary

void	addAnnotation(Annotation annotation)
void	addThesaurus(String species, Thesaurus thesaurus)
void	clear()
String	describe()
String[][]	getAllAnnotations(AnnotationDescription description, String entity)
String[]	getAllCommonNames(String species, String commonName)
Annotation	getAnnotation(AnnotationDescription description)
Annotation	getAnnotation(String species, String curator, String type)
int	getAnnotationCount()
AnnotationDescription[]	getAnnotationDescriptions()
String	getCanonicalName(String species, String commonName)
int[]	getClassifications(AnnotationDescription description, String entity)
int[]	getClassifications(String species, String curator, String type, String entity)
String	getCommonName(String species, String canonicalName)

Method Detail

addAnnotation

void addAnnotation(Annotation annotation)
                   throws Exception

Throws:

Exception

getAnnotationCount

int getAnnotationCount()
                       throws Exception

Throws:

Exception

getAnnotationDescriptions

AnnotationDescription[] getAnnotationDescriptions()
                                                  throws Exception

Throws:

Exception

getAnnotation

Annotation getAnnotation(String species,
                         String curator,
                         String type)
                         throws Exception

Throws:

Exception

getAnnotation

Annotation getAnnotation(AnnotationDescription description)
                         throws Exception

Throws:

Exception

getClassifications

int[] getClassifications(String species,
                         String curator,
                         String type,
                         String entity)
                         throws Exception

Throws:

Exception

getClassifications

int[] getClassifications(AnnotationDescription description,
                         String entity)
                         throws Exception

Throws:

Exception

getAllAnnotations

String[][] getAllAnnotations(AnnotationDescription description,
                             String entity)
                             throws Exception

Throws:

Exception

clear

void clear()
           throws Exception

Throws:

Exception

describe

String describe()
                throws Exception

Throws:

Exception

addThesaurus

void addThesaurus(String species,
                  Thesaurus thesaurus)
                  throws Exception

Throws:

Exception

getCanonicalName

String getCanonicalName(String species,
                        String commonName)
                        throws Exception

Throws:

Exception

getAllCommonNames

String[] getAllCommonNames(String species,
                           String commonName)
                           throws Exception

Throws:

Exception

getCommonName

String getCommonName(String species,
                     String canonicalName)
                     throws Exception

Throws:

Exception