cytoscape.util
Class BookmarksUtil

java.lang.Object
  cytoscape.util.BookmarksUtil

public abstract class BookmarksUtil
extends Object

Utility methods for getting entries in the bookmark object.

Author:

kono

Constructor Summary

BookmarksUtil()

Method Summary

static boolean	deleteBookmark(cytoscape.bookmarks.Bookmarks pBookmarks, String pCategoryName, cytoscape.bookmarks.DataSource pDataSource)
static boolean	deleteBookmark(String filename, cytoscape.bookmarks.Bookmarks pBookmarks, String pCategoryName, cytoscape.bookmarks.DataSource pDataSource)
static String	getAttribute(cytoscape.bookmarks.DataSource source, String attrName)
static cytoscape.bookmarks.Bookmarks	getBookmarks(File pBookmarkFile)
static cytoscape.bookmarks.Bookmarks	getBookmarks(URL bookmarkUrl)
static cytoscape.bookmarks.Category	getCategory(String categoryName, List<cytoscape.bookmarks.Category> categoryList) Select specific category from a list of categories.
static List<cytoscape.bookmarks.DataSource>	getDataSourceList(String categoryName, List<cytoscape.bookmarks.Category> categoryList) Traverse bookmark tree and get a list of data sources from the specified category.
static boolean	isInBookmarks(cytoscape.bookmarks.Bookmarks pBookmarks, String pCategoryName, cytoscape.bookmarks.DataSource pDataSource)
static boolean	isInBookmarks(URL pBookmarkURL, String pCategoryName, cytoscape.bookmarks.DataSource pDataSource)
static boolean	saveBookmark(cytoscape.bookmarks.Bookmarks pBookmarks, File pFile)
static void	saveBookmark(cytoscape.bookmarks.Bookmarks pBookmarks, String pCategoryName, cytoscape.bookmarks.DataSource pDataSource)
static void	saveBookmark(cytoscape.bookmarks.Bookmarks pBookmarks, String pCategoryName, cytoscape.bookmarks.DataSource pDataSource, FileOutputStream pFos)
static boolean	saveBookmark(URL pBookmarkURL, String pCategoryName, cytoscape.bookmarks.DataSource pDataSource)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BookmarksUtil

public BookmarksUtil()

Method Detail

getDataSourceList

public static List<cytoscape.bookmarks.DataSource> getDataSourceList(String categoryName,
                                                                     List<cytoscape.bookmarks.Category> categoryList)

Traverse bookmark tree and get a list of data sources from the specified category.

Parameters:

categoryName -

Returns:

getCategory

public static cytoscape.bookmarks.Category getCategory(String categoryName,
                                                       List<cytoscape.bookmarks.Category> categoryList)

Select specific category from a list of categories.

Parameters:

categoryName -

categoryList -

Returns:

getAttribute

public static String getAttribute(cytoscape.bookmarks.DataSource source,
                                  String attrName)

getBookmarks

public static cytoscape.bookmarks.Bookmarks getBookmarks(URL bookmarkUrl)
                                                  throws javax.xml.bind.JAXBException,
                                                         IOException

Throws:

javax.xml.bind.JAXBException

IOException

getBookmarks

public static cytoscape.bookmarks.Bookmarks getBookmarks(File pBookmarkFile)

saveBookmark

public static void saveBookmark(cytoscape.bookmarks.Bookmarks pBookmarks,
                                String pCategoryName,
                                cytoscape.bookmarks.DataSource pDataSource,
                                FileOutputStream pFos)
                         throws javax.xml.bind.JAXBException,
                                IOException

Throws:

javax.xml.bind.JAXBException

IOException

saveBookmark

public static boolean saveBookmark(URL pBookmarkURL,
                                   String pCategoryName,
                                   cytoscape.bookmarks.DataSource pDataSource)

saveBookmark

public static boolean saveBookmark(cytoscape.bookmarks.Bookmarks pBookmarks,
                                   File pFile)

saveBookmark

public static void saveBookmark(cytoscape.bookmarks.Bookmarks pBookmarks,
                                String pCategoryName,
                                cytoscape.bookmarks.DataSource pDataSource)

deleteBookmark

public static boolean deleteBookmark(String filename,
                                     cytoscape.bookmarks.Bookmarks pBookmarks,
                                     String pCategoryName,
                                     cytoscape.bookmarks.DataSource pDataSource)

deleteBookmark

public static boolean deleteBookmark(cytoscape.bookmarks.Bookmarks pBookmarks,
                                     String pCategoryName,
                                     cytoscape.bookmarks.DataSource pDataSource)

isInBookmarks

public static boolean isInBookmarks(cytoscape.bookmarks.Bookmarks pBookmarks,
                                    String pCategoryName,
                                    cytoscape.bookmarks.DataSource pDataSource)

isInBookmarks

public static boolean isInBookmarks(URL pBookmarkURL,
                                    String pCategoryName,
                                    cytoscape.bookmarks.DataSource pDataSource)