cytoscape.visual.mappings
Class ContinuousMapping

java.lang.Object
  cytoscape.visual.SubjectBase
      cytoscape.visual.mappings.ContinuousMapping

All Implemented Interfaces:

ObjectMapping, Cloneable

public class ContinuousMapping
extends SubjectBase
implements ObjectMapping

Implements an interpolation table mapping data to values of a particular class. The data value is extracted from a bundle of attributes by using a specified data attribute name. For refactoring changes in this class, please refer to: cytoscape.visual.mappings.continuous.README.txt.

Field Summary

Fields inherited from interface cytoscape.visual.mappings.ObjectMapping

EDGE_MAPPING, NODE_MAPPING

Constructor Summary

ContinuousMapping(Object defaultObj, byte mapType)
Constructor.

Method Summary

void	addPoint(double value, BoundaryRangeValues brv) Adds a New Data Point.
void	applyProperties(Properties props, String baseKey, ValueParser parser) Customizes this object by applying mapping defintions described by the supplied Properties argument.
Object	calculateRangeValue(Map attrBundle) Calculates the Range Value.
Object	clone() Clones the Mapping Object.
Class[]	getAcceptedDataClasses() Gets Accepted Data Classes.
ArrayList	getAllPoints() Gets all Data Points.
String	getControllingAttributeName() Gets the Name of the Controlling Attribute.
Interpolator	getInterpolator() Gets the Mapping Interpolator.
JPanel	getLegend(String visualAttr, byte b)
ContinuousMappingPoint	getPoint(int index) Gets Specified Point.
int	getPointCount() Gets Total Point Count.
Properties	getProperties(String baseKey) Returns a Properties object with entries suitable for customizing this object via the applyProperties method.
Class	getRangeClass() Gets the Range Class.
JPanel	getUI(JDialog dialog, CyNetwork network) Gets the UI Object Associated with the Mapper.
void	removePoint(int index) Removes a Point from the List.
void	setControllingAttributeName(String attrName, CyNetwork network, boolean preserveMapping) Sets the Name of the Controlling Attribte.
void	setInterpolator(Interpolator interpolator) Sets the Mapping Interpolator.

Methods inherited from class cytoscape.visual.SubjectBase

addChangeListener, fireStateChanged, removeChangeListener

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface cytoscape.visual.mappings.ObjectMapping

addChangeListener, removeChangeListener

Constructor Detail

ContinuousMapping

public ContinuousMapping(Object defaultObj,
                         byte mapType)
                  throws IllegalArgumentException

Constructor.

Parameters:

defaultObj - default object to map to

mapType - Type of mapping, one of ObjectMapping.EDGE_MAPPING or ObjectMapping.NODE_MAPPING

Throws:

IllegalArgumentException

Method Detail

clone

public Object clone()

Clones the Mapping Object.

Specified by:

clone in interface ObjectMapping

Overrides:

clone in class Object

Returns:

Cloned Mapping Object.

getAllPoints

public ArrayList getAllPoints()

Gets all Data Points.

Returns:

ArrayList of ContinuousMappingPoint objects.

addPoint

public void addPoint(double value,
                     BoundaryRangeValues brv)

Adds a New Data Point.

removePoint

public void removePoint(int index)

Removes a Point from the List.

getPointCount

public int getPointCount()

Gets Total Point Count.

getPoint

public ContinuousMappingPoint getPoint(int index)

Gets Specified Point.

Parameters:

index - Index Value.

Returns:

ContinuousMappingPoint.

applyProperties

public void applyProperties(Properties props,
                            String baseKey,
                            ValueParser parser)

Customizes this object by applying mapping defintions described by the supplied Properties argument. Required by the ObjectMapping interface.

Specified by:

applyProperties in interface ObjectMapping

Parameters:

props - Properties Object.

baseKey - Base Key for finding properties.

parser - ValueParser Object.

getProperties

public Properties getProperties(String baseKey)

Returns a Properties object with entries suitable for customizing this object via the applyProperties method. Required by the ObjectMapping interface.

Specified by:

getProperties in interface ObjectMapping

Parameters:

baseKey - Base Key for creating properties.

Returns:

Properties Object.

getRangeClass

public Class getRangeClass()

Gets the Range Class. Required by the ObjectMapping interface.

Specified by:

getRangeClass in interface ObjectMapping

Returns:

Class object.

getAcceptedDataClasses

public Class[] getAcceptedDataClasses()

Gets Accepted Data Classes. Required by the ObjectMapping interface.

Specified by:

getAcceptedDataClasses in interface ObjectMapping

Returns:

ArrayList of Class objects.

getControllingAttributeName

public String getControllingAttributeName()

Gets the Name of the Controlling Attribute. Required by the ObjectMapping interface.

Specified by:

getControllingAttributeName in interface ObjectMapping

Returns:

Attribue Name.

setControllingAttributeName

public void setControllingAttributeName(String attrName,
                                        CyNetwork network,
                                        boolean preserveMapping)

Sets the Name of the Controlling Attribte.

Specified by:

setControllingAttributeName in interface ObjectMapping

Parameters:

attrName - Attribute Name.

network - CytoscapeNetwork Object.

preserveMapping - Flag to preserve mapping.

getInterpolator

public Interpolator getInterpolator()

Gets the Mapping Interpolator. Required by the ObjectMapping interface.

Returns:

Interpolator Object.

setInterpolator

public void setInterpolator(Interpolator interpolator)

Sets the Mapping Interpolator. Required by the ObjectMapping interface.

Parameters:

interpolator - Interpolator Object.

getUI

public JPanel getUI(JDialog dialog,
                    CyNetwork network)

Gets the UI Object Associated with the Mapper. Required by the ObjectMapping interface.

Specified by:

getUI in interface ObjectMapping

Parameters:

dialog - Parent Dialog.

network - CyNetwork.

Returns:

JPanel Object.

getLegend

public JPanel getLegend(String visualAttr,
                        byte b)

Specified by:

getLegend in interface ObjectMapping

calculateRangeValue

public Object calculateRangeValue(Map attrBundle)

Calculates the Range Value. Required by the ObjectMapping interface.

Specified by:

calculateRangeValue in interface ObjectMapping

Parameters:

attrBundle - A Bundle of Attributes.

Returns:

Mapping object.