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Cytoscape 2.6.2 (c) 2006,2007 ISB, MSKCC, UCSD
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Constant Field Values

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cytoscape.*

cytoscape.CyNetworkEvent
public static final int BEGIN 0
public static final int END 1
public static final int GRAPH_REPLACED 10
public static final int UNKNOWN -1

cytoscape.Cytoscape
public static final String NETWORK_LOADED "NETWORK_LOADED"
public static final String NETWORK_MODIFIED "NETWORK_MODIFIED"
public static final String NETWORK_SAVED "NETWORK_SAVED"
public static final String NETWORK_TITLE_MODIFIED "NETWORK_TITLE_MODIFIED"
public static final String ONTOLOGY_ROOT "ONTOLOGY_ROOT"
public static final String PREFERENCE_MODIFIED "PREFERENCE_MODIFIED"
public static final String PREFERENCES_UPDATED "PREFERENCES_UPDATED"
public static final String PROXY_MODIFIED "PROXY_MODIFIED"
public static final String READER_CLIENT_KEY "reader_client_key"
public static final String RESTORE_PLUGIN_STATE "RESTORE_PLUGIN_STATE"
public static final String SAVE_PLUGIN_STATE "SAVE_PLUGIN_STATE"
public static final int SELECT_EDGES_ONLY 2
public static final int SELECT_NODES_AND_EDGES 3
public static final int SELECT_NODES_ONLY 1
public static final int SESSION_CLOSED 3

cytoscape.CytoscapeModifiedNetworkManager
public static final String CLEAN "Clean"
public static final String MODIFIED "Modified"

cytoscape.actions.*

cytoscape.actions.DeleteAction
public static final String ACTION_TITLE "Delete Selected Nodes and Edges"

cytoscape.actions.ExportAction
public static final String MENU_LABEL "Export As..."

cytoscape.actions.OpenSessionAction
public static final String SESSION_EXT "cys"

cytoscape.actions.PrintAction
public static final String MENU_LABEL "Print..."

cytoscape.actions.SaveSessionAction
public static final String SESSION_EXT ".cys"

cytoscape.data.*

cytoscape.data.AttributeSaverDialog
public static final int EDGES 1
public static final int NODES 0

cytoscape.data.CyAttributes
public static final byte TYPE_BOOLEAN 1
public static final byte TYPE_COMPLEX -4
public static final byte TYPE_FLOATING 2
public static final byte TYPE_INTEGER 3
public static final byte TYPE_SIMPLE_LIST -2
public static final byte TYPE_SIMPLE_MAP -3
public static final byte TYPE_STRING 4
public static final byte TYPE_UNDEFINED -1

cytoscape.data.ExpressionData
public static final int LAMBDA 1
public static final int MAX_LINE_SIZE 8192
public static final int NONE 2
public static final int PVAL 0
public static final int UNKNOWN 3

cytoscape.data.SelectEvent
public static final int EDGE_SET 3
public static final int NODE_SET 2
public static final int SINGLE_EDGE 1
public static final int SINGLE_NODE 0

cytoscape.data.Semantics
public static final String BIOLOGICAL_PROCESS "biological_process"
public static final String CANONICAL_NAME "canonicalName"
public static final String CELLULAR_COMPONENT "cellular_component"
public static final String DNA "DNA"
public static final String GO_ALIASES "GO Aliases"
public static final String GO_COMMON_NAME "GO Common Name"
public static final String INTERACTION "interaction"
public static final String MOLECULAR_FUNCTION "molecular_function"
public static final String MOLECULE_TYPE "molecule_type"
public static final String PROTEIN "protein"
public static final String RNA "RNA"
public static final String SPECIES "species"

cytoscape.data.annotation.OntologyMapperDialog
public static final String GO_BIOLOGICAL_PROCESS "GO Biological Process"
public static final String GO_CELLULAR_COMPONENT "GO Cellular Component"
public static final String GO_MOLECULAR_FUNCTION "GO Molecular Function"

cytoscape.data.attr.MultiHashMapDefinition
public static final byte TYPE_BOOLEAN 1
public static final byte TYPE_FLOATING_POINT 2
public static final byte TYPE_INTEGER 3
public static final byte TYPE_STRING 4

cytoscape.data.ontology.Ontology
public static final String IS_ONTOLOGY "Is_Ontology"

cytoscape.data.ontology.readers.OBOFlatFileReader
public static final String OBO_PREFIX "ontology"
public static final String ONTOLOGY_DAG_ROOT "Ontology DAGs"

cytoscape.data.readers.CytoscapeSessionReader
public static final String BOOKMARK_PACKAGE_NAME "cytoscape.bookmarks"
public static final String CY_PROPS "cytoscape.props"
public static final String CYSESSION "cysession.xml"
public static final String PACKAGE_NAME "cytoscape.generated"
public static final String VIZMAP_PROPS "vizmap.props"
public static final String XGMML_EXT ".xgmml"

cytoscape.data.readers.MetadataParser
public static final String DEFAULT_NETWORK_METADATA_LABEL "Network Metadata"

cytoscape.data.servers.ui.AnotationPanelDescriptor
public static final String IDENTIFIER "ANNOTATION_CHOOSE_PANEL"

cytoscape.data.servers.ui.ManifestFileSelectionPanelDescriptor
public static final String IDENTIFIER "SELECT_OLDFILE_PANEL"

cytoscape.data.servers.ui.OboPanelDescriptor
public static final String IDENTIFIER "OBO_PANEL"

cytoscape.data.servers.ui.SelectFormatPanelDescriptor
public static final String IDENTIFIER "INTRODUCTION_PANEL"

cytoscape.data.servers.ui.SpeciesPanelDescriptor
public static final String IDENTIFIER "SPECIES_PANEL"

cytoscape.data.synonyms.Aliases
public static final String ALIAS "cytoscape.alias.list"

cytoscape.data.webservice.util.WebServiceThemeInstall
public static final String WEBSERVICE_THEME "WebServiceClientPack"

cytoscape.data.writers.CytoscapeSessionWriter
public static final int EDGE 2
public static final int NODE 1

cytoscape.data.writers.XGMMLWriter
public static final String BACKGROUND "backgroundColor"
public static final String GRAPH_VIEW_CENTER_X "GRAPH_VIEW_CENTER_X"
public static final String GRAPH_VIEW_CENTER_Y "GRAPH_VIEW_CENTER_Y"
public static final String GRAPH_VIEW_ZOOM "GRAPH_VIEW_ZOOM"

cytoscape.groups.*

cytoscape.groups.CyGroup
public static final String GROUP_STATE_ATTR "__groupState"
public static final String GROUP_VIEWER_ATTR "__groupViewer"
public static final String MEMBER_LIST_ATTR "__groupMembers"

cytoscape.init.*

cytoscape.init.CyInitParams
public static final int EMBEDDED_WINDOW 4
public static final int ERROR 0
public static final int GUI 1
public static final int LIBRARY 3
public static final int TEXT 2

cytoscape.layout.*

cytoscape.layout.Tunable
public static final int BOOLEAN 2
public static final int BUTTON 8
public static final int COLLAPSABLE 32
public static final int DOUBLE 1
public static final int EDGEATTRIBUTE 5
public static final int GROUP 7
public static final int IMMUTABLE 16
public static final int INTEGER 0
public static final int LIST 6
public static final int MULTISELECT 4
public static final int NODEATTRIBUTE 4
public static final int NOINPUT 1
public static final int NUMERICATTRIBUTE 2
public static final int STRING 3
public static final int USESLIDER 8

cytoscape.plugin.*

cytoscape.plugin.PluginVersionUtils
public static final int BUGFIX 3
public static final int MAJOR 1
public static final int MINOR 2
public static final String versionMatch "^\\d+\\.\\d+"
public static final String versionSplit "\\."

cytoscape.task.*

cytoscape.task.ui.StringUtils
public static final String NOT_AVAILABLE_STR "N/A"
public static final int STR_LENGTH 60

cytoscape.util.*

cytoscape.util.CytoscapeMenuBar
public static final String DEFAULT_MENU_SPECIFIER "Tools"

cytoscape.util.CytoscapeProgressMonitor
public static final int ONE_SECOND 1000

cytoscape.util.FileUtil
public static final String urlPattern "^(jar\\:)?(\\w+\\:\\/+\\S+)(\\!\\/\\S*)?$"

cytoscape.util.ProxyHandler
public static final String PROXY_HOST_PROPERTY_NAME "proxy.server"
public static final String PROXY_PORT_PROPERTY_NAME "proxy.server.port"
public static final String PROXY_TYPE_PROPERTY_NAME "proxy.server.type"

cytoscape.util.ZipUtil
public static final int DEF_COMPRESSION_LEVEL 1

cytoscape.util.intr.IntBTree
public static final int DEFAULT_MAX_BRANCHES 27

cytoscape.util.swing.AttributeImportPanel
public static final String CLOSE_EVENT "CLOSE"

cytoscape.util.swing.CheckBoxJList
public static final String LIST_UPDATED "LIST_UPDATED"

cytoscape.view.*

cytoscape.view.CytoscapeDesktop
public static final int EXTERNAL_VIEW 2
public static final int INTERNAL_VIEW 1
public static final String NETWORK_VIEW_CREATED "NETWORK_VIEW_CREATED"
public static final String NETWORK_VIEW_DESTROYED "NETWORK_VIEW_DESTROYED"
public static final String NETWORK_VIEW_FOCUS "NETWORK_VIEW_FOCUS"
public static final String NETWORK_VIEW_FOCUSED "NETWORK_VIEW_FOCUSED"
public static final String NETWORK_VIEWS_SELECTED "NETWORK_VIEWS_SELECTED"
public static final int TABBED_VIEW 0
public static final String VISUAL_STYLE "VISUAL_STYLE"
public static final String VIZMAP_ENABLED "VIZMAP_ENABLED"

cytoscape.view.cytopanels.BiModalJSplitPane
public static final int MODE_HIDE_SPLIT 2
public static final String MODE_PROPERTY "MODE_PROPERTY"
public static final int MODE_SHOW_SPLIT 1

cytoscape.visual.*

cytoscape.visual.LabelPosition
public static final String centerName "Center"
public static final String eastName "East"
public static final String justifyCenterName "Center Justified"
public static final String justifyLeftName "Left Justified"
public static final String justifyRightName "Right Justified"
public static final String noName "none"
public static final String northEastName "Northeast"
public static final String northName "North"
public static final String northWestName "Northwest"
public static final String southEastName "Southeast"
public static final String southName "South"
public static final String southWestName "Southwest"
public static final String westName "West"

cytoscape.visual.ShapeNodeRealizer
public static final byte DIAMOND 7
public static final byte ELLIPSE 8
public static final byte HEXAGON 9
public static final byte OCTAGON 10
public static final byte PARALLELOGRAM 6
public static final byte RECT 0
public static final byte RECT_3D 2
public static final byte ROUND_RECT 1
public static final byte TRAPEZOID 3
public static final byte TRAPEZOID_2 4
public static final byte TRIANGLE 5

cytoscape.visual.calculators.Calculator
public static final String ID "ID"

cytoscape.visual.mappings.ObjectMapping
public static final byte EDGE_MAPPING 0
public static final byte NODE_MAPPING 1

cytoscape.visual.mappings.continuous.ContinuousUI
public static final int EQUAL 1
public static final int GREATER 2
public static final int LESSER 0

cytoscape.visual.ui.ValueDisplayer
public static final byte ARROW 2
public static final byte COLOR 0
public static final byte DOUBLE 4
public static final byte FONT 7
public static final byte INT 6
public static final byte LABEL_POSITION 8
public static final byte LINETYPE 1
public static final byte NODESHAPE 5
public static final byte STRING 3

cytoscape.visual.ui.VizMapUI
public static final byte EDGE_COLOR 13
public static final byte EDGE_FONT_FACE 18
public static final byte EDGE_FONT_SIZE 19
public static final byte EDGE_LABEL 17
public static final byte EDGE_LABEL_COLOR 20
public static final byte EDGE_LABEL_FONT 101
public static final byte EDGE_LABEL_POSITION 22
public static final byte EDGE_LINETYPE 14
public static final byte EDGE_SRCARROW 15
public static final byte EDGE_SRCARROW_COLOR 50
public static final byte EDGE_TGTARROW 16
public static final byte EDGE_TGTARROW_COLOR 51
public static final byte EDGE_TOOLTIP 21
public static final byte NODE_BORDER_COLOR 1
public static final byte NODE_COLOR 0
public static final byte NODE_FONT_FACE 8
public static final byte NODE_FONT_SIZE 9
public static final byte NODE_HEIGHT 6
public static final byte NODE_LABEL 7
public static final byte NODE_LABEL_COLOR 10
public static final byte NODE_LABEL_FONT 100
public static final byte NODE_LABEL_POSITION 12
public static final byte NODE_LINETYPE 2
public static final byte NODE_SHAPE 3
public static final byte NODE_SIZE 4
public static final byte NODE_TOOLTIP 11
public static final byte NODE_WIDTH 5

cytoscape.visual.ui.editors.continuous.BelowAndAbovePanel
public static final String COLOR_CHANGED "COLOR_CHANGED"

cytoscape.visual.ui.editors.continuous.ContinuousMappingEditorPanel
public static final String EDITOR_WINDOW_CLOSED "EDITOR_WINDOW_CLOSED"
public static final String EDITOR_WINDOW_OPENED "EDITOR_WINDOW_OPENED"

cytoscape.visual.ui.icon.VisualPropertyIcon
public static final int DEFAULT_ICON_SIZE 32

giny.model.*

giny.model.GraphPerspectiveChangeEvent
public static final int EDGES_HIDDEN_TYPE 8
public static final int EDGES_RESTORED_TYPE 2
public static final int EDGES_SELECTED_TYPE 64
public static final int EDGES_UNSELECTED_TYPE 128
public static final int NODES_HIDDEN_TYPE 4
public static final int NODES_RESTORED_TYPE 1
public static final int NODES_SELECTED_TYPE 16
public static final int NODES_UNSELECTED_TYPE 32

giny.model.RootGraphChangeEvent
public static final int EDGES_CREATED_TYPE 2
public static final int EDGES_REMOVED_TYPE 8
public static final int META_RELATIONSHIP_EDGES_CREATED_TYPE 32
public static final int META_RELATIONSHIP_EDGES_REMOVED_TYPE 128
public static final int META_RELATIONSHIP_NODES_CREATED_TYPE 16
public static final int META_RELATIONSHIP_NODES_REMOVED_TYPE 64
public static final int NODES_CREATED_TYPE 1
public static final int NODES_REMOVED_TYPE 4

giny.view.*

giny.view.EdgeView
public static final int BLACK_ARROW 5
public static final int BLACK_CIRCLE 11
public static final int BLACK_DELTA 2
public static final int BLACK_DIAMOND 8
public static final int BLACK_T 14
public static final int CURVED_LINES 1
public static final int EDGE_COLOR_ARROW 6
public static final int EDGE_COLOR_CIRCLE 12
public static final int EDGE_COLOR_DELTA 3
public static final int EDGE_COLOR_DIAMOND 9
public static final int EDGE_COLOR_T 15
public static final int NO_END 0
public static final int STRAIGHT_LINES 2
public static final int WHITE_ARROW 4
public static final int WHITE_CIRCLE 10
public static final int WHITE_DELTA 1
public static final int WHITE_DIAMOND 7
public static final int WHITE_T 13

giny.view.GraphView
public static final int EDGE_LINE_TYPE 3
public static final int EDGE_PAINT 4
public static final int EDGE_SELECTION_PAINT 5
public static final int EDGE_SOURCE_END_PAINT 7
public static final int EDGE_SOURCE_END_SELECTED_PAINT 8
public static final int EDGE_SOURCE_END_TYPE 6
public static final int EDGE_TARGET_END_PAINT 10
public static final int EDGE_TARGET_END_SELECTED_PAINT 11
public static final int EDGE_TARGET_END_TYPE 9
public static final int EDGE_WIDTH 2
public static final int NODE_BORDER_PAINT 5
public static final int NODE_BORDER_WIDTH 6
public static final int NODE_HEIGHT 8
public static final int NODE_LABEL 9
public static final int NODE_PAINT 3
public static final int NODE_SELECTION_PAINT 4
public static final int NODE_SHAPE 2
public static final int NODE_WIDTH 7
public static final int NODE_X_POSITION 0
public static final int NODE_Y_POSITION 1
public static final int NODE_Z_POSITION 10
public static final int SOURCE_INDEX 0
public static final int TARGET_INDEX 1

giny.view.GraphViewChangeEvent
public static final int EDGES_HIDDEN_TYPE 8
public static final int EDGES_RESTORED_TYPE 2
public static final int EDGES_SELECTED_TYPE 64
public static final int EDGES_UNSELECTED_TYPE 128
public static final int NODES_HIDDEN_TYPE 4
public static final int NODES_RESTORED_TYPE 1
public static final int NODES_SELECTED_TYPE 16
public static final int NODES_UNSELECTED_TYPE 32

giny.view.Label
public static final int CENTER 4
public static final int EAST 5
public static final int JUSTIFY_CENTER 64
public static final int JUSTIFY_LEFT 65
public static final int JUSTIFY_RIGHT 66
public static final int NONE 127
public static final int NORTH 1
public static final int NORTHEAST 2
public static final int NORTHWEST 0
public static final int SOURCE_BOUND 9
public static final int SOUTH 7
public static final int SOUTHEAST 8
public static final int SOUTHWEST 6
public static final int TARGET_BOUND 10
public static final int WEST 3

giny.view.NodeView
public static final int DIAMOND 1
public static final int ELLIPSE 2
public static final int HEXAGON 3
public static final int OCTAGON 4
public static final int PARALELLOGRAM 5
public static final int RECTANGLE 6
public static final int ROUNDED_RECTANGLE 7
public static final int TRIANGLE 0

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