Packages

cytoscape	Core Cytoscape Classes.
cytoscape.actions	UI classes that are attached to menu items in the menu or tool bar of the window.
cytoscape.data	Basic data classes used by Cytoscape.
cytoscape.data.annotation	Classes used to represent generic annotation data in Cytoscape.
cytoscape.data.annotation.readers	Reader classes for generic annotation data.
cytoscape.data.attr
cytoscape.data.attr.util
cytoscape.data.ontology
cytoscape.data.ontology.readers
cytoscape.data.readers	Reader classes for the basic data types in cytoscape.data.
cytoscape.data.servers	An interface for annotation data providers and various implementations of that interface, including both remote and in-process implementations.
cytoscape.data.servers.ui
cytoscape.data.synonyms	Classes providing synonym funcationality, that is identifying multiple names that refer to the same entity.
cytoscape.data.synonyms.readers	Readers for classes in the cytoscape.data.synonyms package.
cytoscape.data.webservice
cytoscape.data.webservice.ui
cytoscape.data.webservice.util
cytoscape.data.writers
cytoscape.dialogs	UI classes for performing some action, generally more complicated than those contained in the cytoscape.actions package.
cytoscape.dialogs.logger
cytoscape.dialogs.plugins
cytoscape.dialogs.preferences
cytoscape.ding
cytoscape.giny
cytoscape.groups
cytoscape.init
cytoscape.layout	Classes providing some kind of graph layout functionality.
cytoscape.layout.algorithms
cytoscape.layout.ui
cytoscape.logger
cytoscape.plugin	Classes related to Cytoscape plugins.
cytoscape.task	Cytoscape Task Framework.
cytoscape.task.sample	Sample task, used to illustrate the Task framework.
cytoscape.task.ui	UI code related to task control.
cytoscape.task.util	Utility manager for executing tasks.
cytoscape.util	This package contains utility classes which are deemed generally useful, but which do not clearly belong to any other package.
cytoscape.util.export
cytoscape.util.intr
cytoscape.util.shadegrown
cytoscape.util.swing
cytoscape.util.undo
cytoscape.view	Classes that provide a window to display a graph and UI components connected to that window, such as the menus.
cytoscape.view.cytopanels	CytoPanels Framework.
cytoscape.visual	Framework for generalized mappings from graph attributes to visual attributes.
cytoscape.visual.calculators	Objects that calculate from the data attributes the value for one visual attribute, such as color, shape, or size.
cytoscape.visual.mappings	The Mappings are used by Calculators to map graph attributes to visual attribute values.
cytoscape.visual.mappings.continuous	Mappings from a continuous numerical input to a particular visual attribute.
cytoscape.visual.mappings.discrete	Mappings from a discrete-valued input to a particular visual attribute.
cytoscape.visual.parsers	Translates visual attribute values to and from their String representation.
cytoscape.visual.properties
cytoscape.visual.ui	Top-level UI components for the cytoscape.visual package.
cytoscape.visual.ui.editors.continuous
cytoscape.visual.ui.editors.discrete
cytoscape.visual.ui.icon
ding.view
fing.model
giny.filter
giny.model
giny.view
undo