Cytoscape 2.6.2 (c) 2006,2007 ISB, MSKCC, UCSD

cytoscape
Class CyMain

java.lang.Object
  extended by cytoscape.CyMain
All Implemented Interfaces:
CyInitParams

public class CyMain
extends Object
implements CyInitParams

This is the main startup class for Cytoscape. This parses the command line and implements CyInitParams so that it can be used to initialize cytoscape.

Look and Feel is modified for jgoodies 2.1.4 by Kei Ono


Field Summary
 
Fields inherited from interface cytoscape.init.CyInitParams
EMBEDDED_WINDOW, ERROR, GUI, LIBRARY, TEXT
 
Constructor Summary
CyMain(String[] args)
          Creates a new CyMain object.
 
Method Summary
 String[] getArgs()
          DOCUMENT ME!
 List getEdgeAttributeFiles()
          DOCUMENT ME!
 List getExpressionFiles()
          DOCUMENT ME!
 List getGraphFiles()
          DOCUMENT ME!
 int getMode()
          DOCUMENT ME!
 List getNodeAttributeFiles()
          DOCUMENT ME!
 List getPlugins()
          DOCUMENT ME!
 Properties getProps()
          DOCUMENT ME!
 String getSessionFile()
          DOCUMENT ME!
 Properties getVizProps()
          DOCUMENT ME!
static void main(String[] args)
          DOCUMENT ME!
static void setSessionFile(String sf)
          Provides access to the session file parsed from arguments intercepted by CyStartupListener
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

CyMain

public CyMain(String[] args)
       throws Exception
Creates a new CyMain object.

Parameters:
args - DOCUMENT ME!
Throws:
Exception - DOCUMENT ME!
Method Detail

main

public static void main(String[] args)
                 throws Exception
DOCUMENT ME!

Parameters:
args - DOCUMENT ME!
Throws:
Exception - DOCUMENT ME!

setSessionFile

public static void setSessionFile(String sf)
Provides access to the session file parsed from arguments intercepted by CyStartupListener


getProps

public Properties getProps()
DOCUMENT ME!

Specified by:
getProps in interface CyInitParams
Returns:
DOCUMENT ME!

getVizProps

public Properties getVizProps()
DOCUMENT ME!

Specified by:
getVizProps in interface CyInitParams
Returns:
DOCUMENT ME!

getGraphFiles

public List getGraphFiles()
DOCUMENT ME!

Specified by:
getGraphFiles in interface CyInitParams
Returns:
DOCUMENT ME!

getEdgeAttributeFiles

public List getEdgeAttributeFiles()
DOCUMENT ME!

Specified by:
getEdgeAttributeFiles in interface CyInitParams
Returns:
DOCUMENT ME!

getNodeAttributeFiles

public List getNodeAttributeFiles()
DOCUMENT ME!

Specified by:
getNodeAttributeFiles in interface CyInitParams
Returns:
DOCUMENT ME!

getExpressionFiles

public List getExpressionFiles()
DOCUMENT ME!

Specified by:
getExpressionFiles in interface CyInitParams
Returns:
DOCUMENT ME!

getPlugins

public List getPlugins()
DOCUMENT ME!

Specified by:
getPlugins in interface CyInitParams
Returns:
DOCUMENT ME!

getSessionFile

public String getSessionFile()
DOCUMENT ME!

Specified by:
getSessionFile in interface CyInitParams
Returns:
DOCUMENT ME!

getMode

public int getMode()
DOCUMENT ME!

Specified by:
getMode in interface CyInitParams
Returns:
DOCUMENT ME!

getArgs

public String[] getArgs()
DOCUMENT ME!

Specified by:
getArgs in interface CyInitParams
Returns:
DOCUMENT ME!

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