Cytoscape 2.6.2 (c) 2006,2007 ISB, MSKCC, UCSD

Package cytoscape.actions

UI classes that are attached to menu items in the menu or tool bar of the window.

See:
          Description

Class Summary
AlignHorizontalAction  
AlignVerticalAction  
AlphabeticalSelectionAction  
AnimatedLayoutAction Deprecated. Not apparently used.
ArrangeAction  
BackgroundColorAction Deprecated. Use vizmapper gui to edit background color.
BendSelectedEdgesAction  
BirdsEyeViewAction Deprecated. This class is no longer used since the BirdsEyeView is now always part of the NetworkPanel.
BookmarkAction  
CheckBoxFileChooser Deprecated. This isn't apparently used anywhere.
CloneGraphInNewWindowAction  
CreateNetworkViewAction  
CytoPanelAction  
DeleteAction action for deleting selected Cytoscape nodes and edges
DeselectAllAction  
DeSelectAllEdgesAction  
DeSelectAllNodesAction  
DestroyNetworkAction  
DestroyNetworkViewAction  
EdgeManipulationAction  
ExitAction  
ExpFileChooser Deprecated. Not apparently used anywhere.
ExportAction  
ExportAsGMLAction  
ExportAsGraphicsAction Action for exporting a network view to bitmap or vector graphics.
ExportAsInteractionsAction write out the current graph to the specified file, using the standard interactions format: nodeA edgeType nodeB.
ExportAsXGMMLAction This action is for exporting network and attributes in XGMML file.
ExportEdgeAttributesAction  
ExportNodeAttributesAction  
ExportVizmapAction Export visual styles as a vizmap.props file
FitContentAction  
GinyUtils Utility operations for selection and hiding/unhiding nodes and edges in a Giny GraphView.
GraphObjectSelectionAction  
HelpAboutAction  
HelpContactHelpDeskAction  
HelpContentsAction Really just a wrapper for the CSH.DisplayHelpFromSource action.
HideSelectedAction  
HideSelectedEdgesAction  
HideSelectedNodesAction  
ImportBioDataServerAction Action allows the loading of a BioDataServer from the gui.
ImportEdgeAttributesAction  
ImportExpressionMatrixAction User has requested loading of an Expression Matrix File.
ImportGraphFileAction Imports a graph of arbitrary type.
ImportNodeAttributesAction  
ImportVizmapAction  
InvertSelectedEdgesAction  
InvertSelectedNodesAction  
ListFromFileSelectionAction  
LoadNetworkTask Task to load a new network.
LoggerAction Created by IntelliJ IDEA.
MapOntologyAction  
NewNetworkAction creates a new network and associates an editor with it
NewSessionAction  
NewWindowSelectedNodesEdgesAction  
NewWindowSelectedNodesOnlyAction  
OpenSessionAction Call the session reader and read everything in the zip archive.
PluginManagerAction  
PluginUpdateAction  
PreferenceAction  
PrintAction  
ProxyServerAction  
RotateSelectedNodesAction Rotates the given selection by the specified amount.
SaveSessionAction Save Session action.
SaveSessionAsAction Same as SaveSessionAction, but always opens file chooser.
SelectAdjacentEdgesAction  
SelectAllAction  
SelectAllEdgesAction  
SelectAllNodesAction  
SelectConnectedNodesAction select every node connected to the current selected edges.
SelectFirstNeighborsAction select every first neighbor (directly connected nodes) of the currently selected nodes.
SelectionModeAction  
SetVisualPropertiesAction  
ShowAllAction  
ShowGraphicsDetailsAction  
StraightenSelectedEdgesAction  
ToggleVisualMapperAction This class implements two menu items that allow enabling and disabling the visual mapper.
UnHideSelectedAction  
UnHideSelectedEdgesAction  
UnHideSelectedNodesAction  
WebServiceNetworkImportAction  
ZoomAction  
ZoomSelectedAction  
 

Package cytoscape.actions Description

UI classes that are attached to menu items in the menu or tool bar of the window. These classes are usually short and delegate to other objects to do the actual work.


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