Package cytoscape.data.annotation

Classes used to represent generic annotation data in Cytoscape.

See:
Description

Class Summary

Annotation	Store any number of classifications for named entities, each of which is from a specified species, and where the classifications are all terms from an ontology (a controlled vocabulary for some subject domain, expressed as a directed acyclic graph).
AnnotationDescription	Distinguish among different ontologies, by curator and type.
AnnotationGui
FlattenIntVectors	given a vector which nests other vectors, each resolving eventually to a list of Integers, flatten it out into a simple 1-level-deep vector of Integer vectors.
Ontology	Contains a collection of OntologyTerms, each of which may have pointers to other terms, creating a hierarchical controlled vocabulary.
OntologyDescription	Distinguish among different ontologies, by curator and type.
OntologyMapperDialog
OntologyTerm	Represents one node in an ontology, which is a hierarchical classification of entities using a controlled vocabulary.

Package cytoscape.data.annotation Description

Classes used to represent generic annotation data in Cytoscape.