Cytoscape 2.6.2 (c) 2006,2007 ISB, MSKCC, UCSD

cytoscape.data.ontology
Class DBReference

java.lang.Object
  extended by cytoscape.data.ontology.DBReference

public class DBReference
extends Object

Represents an entry in the database cross reference.

Author:
kono

Constructor Summary
DBReference(String abbreviation, String name, String genericUrl)
          Creates a new DBReference object.
DBReference(String abbreviation, String name, String urlSyntax, String genericUrl, String object)
          Creates a new DBReference object.
 
Method Summary
 String getAbbreviation()
          DOCUMENT ME!
 String getFullName()
          DOCUMENT ME!
 URL getGenericURL()
          DOCUMENT ME!
 String getObject()
          DOCUMENT ME!
 URL getQueryURL(String entry)
          DOCUMENT ME!
 List<String> getSynonyms()
          DOCUMENT ME!
 void setSynonym(List<String> synonym)
          DOCUMENT ME!
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

DBReference

public DBReference(String abbreviation,
                   String name,
                   String genericUrl)
Creates a new DBReference object.

Parameters:
abbreviation - DOCUMENT ME!
name - DOCUMENT ME!
genericUrl - DOCUMENT ME!

DBReference

public DBReference(String abbreviation,
                   String name,
                   String urlSyntax,
                   String genericUrl,
                   String object)
Creates a new DBReference object.

Parameters:
abbreviation - DOCUMENT ME!
name - DOCUMENT ME!
urlSyntax - DOCUMENT ME!
genericUrl - DOCUMENT ME!
object - DOCUMENT ME!
Method Detail

getAbbreviation

public String getAbbreviation()
DOCUMENT ME!

Returns:
DOCUMENT ME!

getFullName

public String getFullName()
DOCUMENT ME!

Returns:
DOCUMENT ME!

getGenericURL

public URL getGenericURL()
                  throws MalformedURLException
DOCUMENT ME!

Returns:
DOCUMENT ME!
Throws:
MalformedURLException - DOCUMENT ME!

getObject

public String getObject()
DOCUMENT ME!

Returns:
DOCUMENT ME!

getSynonyms

public List<String> getSynonyms()
DOCUMENT ME!

Returns:
DOCUMENT ME!

getQueryURL

public URL getQueryURL(String entry)
                throws MalformedURLException
DOCUMENT ME!

Parameters:
entry - DOCUMENT ME!
Returns:
DOCUMENT ME!
Throws:
MalformedURLException - DOCUMENT ME!

setSynonym

public void setSynonym(List<String> synonym)
DOCUMENT ME!

Parameters:
synonym - DOCUMENT ME!

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