Cytoscape 2.6.2 (c) 2006,2007 ISB, MSKCC, UCSD

cytoscape.data.ontology
Class GOTerm

java.lang.Object
  extended by org.biojava.utils.AbstractChangeable
      extended by cytoscape.data.ontology.OntologyTerm
          extended by cytoscape.data.ontology.GOTerm
All Implemented Interfaces:
org.biojava.bio.Annotatable, org.biojava.ontology.OntologyTerm, org.biojava.ontology.Term, org.biojava.utils.Changeable

public class GOTerm
extends OntologyTerm

A Gene Ontology term. This class is an extended version of normal ontology.

Author:
kono

Nested Class Summary
 
Nested classes/interfaces inherited from class cytoscape.data.ontology.OntologyTerm
OntologyTerm.SynonymType
 
Nested classes/interfaces inherited from interface org.biojava.ontology.OntologyTerm
org.biojava.ontology.OntologyTerm.Impl
 
Nested classes/interfaces inherited from interface org.biojava.bio.Annotatable
org.biojava.bio.Annotatable.AnnotationForwarder
 
Field Summary
 
Fields inherited from interface org.biojava.ontology.Term
ONTOLOGY
 
Fields inherited from interface org.biojava.bio.Annotatable
ANNOTATION
 
Constructor Summary
GOTerm(String id, String termName, String ontologyName, String description)
          Creates a new GOTerm object.
 
Method Summary
 Map getCrossReferences()
          DOCUMENT ME!
 String getDescription()
          DOCUMENT ME!
 String getFullName()
          DOCUMENT ME!
 String getNameSpace()
          DOCUMENT ME!
 String getType()
          DOCUMENT ME!
 
Methods inherited from class cytoscape.data.ontology.OntologyTerm
addSynonym, addSynonym, getAnnotation, getName, getOntology, getSynonyms, removeSynonym
 
Methods inherited from class org.biojava.utils.AbstractChangeable
addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 
Methods inherited from interface org.biojava.utils.Changeable
addChangeListener, addChangeListener, isUnchanging, removeChangeListener, removeChangeListener
 

Constructor Detail

GOTerm

public GOTerm(String id,
              String termName,
              String ontologyName,
              String description)
Creates a new GOTerm object.

Parameters:
id - DOCUMENT ME!
termName - DOCUMENT ME!
ontologyName - DOCUMENT ME!
description - DOCUMENT ME!
Method Detail

getNameSpace

public String getNameSpace()
DOCUMENT ME!

Returns:
DOCUMENT ME!

getCrossReferences

public Map getCrossReferences()
DOCUMENT ME!

Returns:
DOCUMENT ME!

getFullName

public String getFullName()
DOCUMENT ME!

Returns:
DOCUMENT ME!

getDescription

public String getDescription()
DOCUMENT ME!

Specified by:
getDescription in interface org.biojava.ontology.Term
Overrides:
getDescription in class OntologyTerm
Returns:
DOCUMENT ME!

getType

public String getType()
DOCUMENT ME!

Returns:
DOCUMENT ME!

www.cytoscape.org