Package cytoscape.data.readers

Reader classes for the basic data types in cytoscape.data.

See:
Description

Interface Summary

GraphReader

Interface for Reading in Cytoscape Graphs.

Class Summary

AbstractGraphReader
BookmarkReader
CyAttributesReader
CytoscapeSessionReader	Reader to load CYtoscape Session file (.cys).
GMLNode	This class represents a GMLNode.
GMLParser	The purpose of hte class is to translate gml into an object tree, and print out an object treee into GML
GMLReader	This class is responsible for converting a gml object tree into cytoscape objects New features to the current version: 1.
GMLTree	This class wraps around GMLNode and provides various methods for constructing a tree structure given other data.
GMLWriter	The purpse of this class is to translate cytoscape data structures into a gml object tree, we can then use the gml parser to write this tree out into a file
InteractionsReader	Reader for graphs in the interactions file format.
KeyValue
MetadataParser	Manipulates network metadata for loading and saving.
TextFileReader
TextHttpReader
TextJarReader
VisualStyleBuilder	Based on the graph/node/edge view information, build new Visual Style.
XGMMLReader	XGMML file reader.

Enum Summary

GMLTag
MetadataEntries	Entries in the network metadata.

Exception Summary

GMLException	Exception for GML Reader.
XGMMLException	Exception for XGMML Reader.

Package cytoscape.data.readers Description

Reader classes for the basic data types in cytoscape.data.