Uses of Class
cytoscape.CyEdge

Packages that use CyEdge

cytoscape	Core Cytoscape Classes.
cytoscape.ding
cytoscape.giny
cytoscape.groups
cytoscape.view	Classes that provide a window to display a graph and UI components connected to that window, such as the menus.

Uses of CyEdge in cytoscape

Methods in cytoscape that return CyEdge

CyEdge	CyNetwork.addEdge(Edge cytoscape_edge) Add a edge to this Network that already exists in Cytoscape
static CyEdge	Cytoscape.getCyEdge(Node node_1, Node node_2, String attribute, Object attribute_value, boolean create) Gets the first CyEdge found between the two nodes (direction does not matter) that has the given value for the given attribute.
static CyEdge	Cytoscape.getCyEdge(Node source, Node target, String attribute, Object attribute_value, boolean create, boolean directed) Gets the first CyEdge found between the two nodes that has the given value for the given attribute.
static CyEdge	Cytoscape.getCyEdge(String source_alias, String edge_name, String target_alias, String interaction_type) Returns and edge if it exists, otherwise creates a directed edge.

Uses of CyEdge in cytoscape.ding

Methods in cytoscape.ding with parameters of type CyEdge

void	DingNetworkView.applyLayout(CyLayoutAlgorithm layout, CyNode[] nodes, CyEdge[] edges) DOCUMENT ME!
void	DingNetworkView.applyLockedLayout(CyLayoutAlgorithm layout, CyNode[] nodes, CyEdge[] edges) DOCUMENT ME!
boolean	DingNetworkView.applyVizMap(CyEdge edge) DOCUMENT ME!
boolean	DingNetworkView.applyVizMap(CyEdge edge, VisualStyle style) DOCUMENT ME!
boolean	DingNetworkView.setSelected(CyEdge[] edges) DOCUMENT ME!

Uses of CyEdge in cytoscape.giny

Methods in cytoscape.giny that return CyEdge

CyEdge	FingCyNetwork.addEdge(Edge cytoscape_edge) Add a edge to this Network that already exists in Cytoscape
CyEdge	CytoscapeRootGraph.getEdge(String identifier) DOCUMENT ME!
CyEdge	CytoscapeFingRootGraph.getEdge(String identifier) DOCUMENT ME!

Uses of CyEdge in cytoscape.groups

Methods in cytoscape.groups that return types with arguments of type CyEdge

List<CyEdge>	CyGroupImpl.getInnerEdges() Get all of the edges completely contained within this group
List<CyEdge>	CyGroup.getInnerEdges() Get all of the edges completely contained within this group
List<CyEdge>	CyGroupImpl.getOuterEdges() Get all of the edges partially contained within this group
List<CyEdge>	CyGroup.getOuterEdges() Get all of the edges partially contained within this group

Methods in cytoscape.groups with parameters of type CyEdge

void	CyGroupImpl.addInnerEdge(CyEdge edge) Add an inner edge to the map.
void	CyGroup.addInnerEdge(CyEdge edge) Add an inner edge to the map.
void	CyGroupImpl.addOuterEdge(CyEdge edge) Add an outer edge to the map.
void	CyGroup.addOuterEdge(CyEdge edge) Add an outer edge to the map.
void	CyGroupImpl.removeInnerEdge(CyEdge edge) Remove an inner edge from the map.
void	CyGroup.removeInnerEdge(CyEdge edge) Remove an inner edge from the map.
void	CyGroupImpl.removeOuterEdge(CyEdge edge) Remove an outer edge from the map.
void	CyGroup.removeOuterEdge(CyEdge edge) Remove an outer edge from the map.

Method parameters in cytoscape.groups with type arguments of type CyEdge

static CyGroup	CyGroupManager.createGroup(String groupName, List<CyNode> nodeList, List<CyEdge> innerEdgeList, List<CyEdge> outerEdgeList, String viewer, CyNetwork network) Create a new group by specifying all components.
static CyGroup	CyGroupManager.createGroup(String groupName, List<CyNode> nodeList, List<CyEdge> innerEdgeList, List<CyEdge> outerEdgeList, String viewer, CyNetwork network) Create a new group by specifying all components.

Constructor parameters in cytoscape.groups with type arguments of type CyEdge

CyGroupImpl(CyNode groupNode, List<CyNode> nodeList, List<CyEdge> internalEdges, List<CyEdge> externalEdges, CyNetwork network)
Constructor to create an empty group.

CyGroupImpl(CyNode groupNode, List<CyNode> nodeList, List<CyEdge> internalEdges, List<CyEdge> externalEdges, CyNetwork network)
Constructor to create an empty group.

Uses of CyEdge in cytoscape.view

Methods in cytoscape.view with parameters of type CyEdge

void	CyNetworkView.applyLayout(CyLayoutAlgorithm layout, CyNode[] nodes, CyEdge[] edges) Applies the given layout to only the given Nodes and Edges.
void	CyNetworkView.applyLockedLayout(CyLayoutAlgorithm layout, CyNode[] nodes, CyEdge[] edges) Applies the given layout to the entire CyNetworkView, but locks the given Nodes and Edges in place.
boolean	CyNetworkView.applyVizMap(CyEdge edge) Applies the given edge to the given vizmapper
boolean	CyNetworkView.applyVizMap(CyEdge edge, VisualStyle style) Applies the given edge to the given vizmapper
boolean	CyNetworkView.setSelected(CyEdge[] edges) Deprecated. this method is not working, use CyNetwork.setSelectedEdgeState(Collection, boolean)