Cytoscape 2.8.0 API

cytoscape.data.ontology
Class DBCrossReferences

java.lang.Object
  extended by cytoscape.data.ontology.DBCrossReferences

public class DBCrossReferences
extends Object

Database cress reference.

This class manages the relationships between databases. The cross reference file is available at:
http://www.geneontology.org/doc/GO.xrf_abbs

Since:
Cytoscape 2.4
Version:
0.9
Author:
kono

Constructor Summary
DBCrossReferences()
          Creates a new DBCrossReferences object.
 
Method Summary
 Set getDBNames()
          DOCUMENT ME!
 DBReference getDBReference(String abbreviation)
          DOCUMENT ME!
 void load()
          DOCUMENT ME!
 void setDBReference(DBReference db)
          Add a database reference object
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

DBCrossReferences

public DBCrossReferences()
Creates a new DBCrossReferences object.

Method Detail

load

public void load()
          throws IOException
DOCUMENT ME!

Throws:
IOException - DOCUMENT ME!

setDBReference

public void setDBReference(DBReference db)
Add a database reference object

Parameters:
db -

getDBNames

public Set getDBNames()
DOCUMENT ME!

Returns:
DOCUMENT ME!

getDBReference

public DBReference getDBReference(String abbreviation)
DOCUMENT ME!

Parameters:
abbreviation - DOCUMENT ME!
Returns:
DOCUMENT ME!

Cytoscape 2.8.0 API

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