cytoscape.data.ontology
Class DBCrossReferences

java.lang.Object
  cytoscape.data.ontology.DBCrossReferences

public class DBCrossReferences
extends Object

Database cress reference.

This class manages the relationships between databases. The cross reference file is available at:
http://www.geneontology.org/doc/GO.xrf_abbs

Since:

Cytoscape 2.4

Version:

0.9

Author:

kono

Constructor Summary

DBCrossReferences()
Creates a new DBCrossReferences object.

Method Summary

Set	getDBNames() DOCUMENT ME!
DBReference	getDBReference(String abbreviation) DOCUMENT ME!
void	load() DOCUMENT ME!
void	setDBReference(DBReference db) Add a database reference object

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DBCrossReferences

public DBCrossReferences()

Creates a new DBCrossReferences object.

Method Detail

load

public void load()
          throws IOException

DOCUMENT ME!

Throws:

IOException - DOCUMENT ME!

setDBReference

public void setDBReference(DBReference db)

Add a database reference object

Parameters:

db -

getDBNames

public Set getDBNames()

DOCUMENT ME!

Returns:

DOCUMENT ME!

getDBReference

public DBReference getDBReference(String abbreviation)

DOCUMENT ME!

Parameters:

abbreviation - DOCUMENT ME!

Returns:

DOCUMENT ME!