cytoscape.data.ontology
Class DBReference

java.lang.Object
  cytoscape.data.ontology.DBReference

public class DBReference
extends Object

Represents an entry in the database cross reference.

Author:

kono

Constructor Summary

DBReference(String abbreviation, String name, String genericUrl)
Creates a new DBReference object.

DBReference(String abbreviation, String name, String urlSyntax, String genericUrl, String object)
Creates a new DBReference object.

Method Summary

String	getAbbreviation() DOCUMENT ME!
String	getFullName() DOCUMENT ME!
URL	getGenericURL() DOCUMENT ME!
String	getObject() DOCUMENT ME!
URL	getQueryURL(String entry) DOCUMENT ME!
List<String>	getSynonyms() DOCUMENT ME!
void	setSynonym(List<String> synonym) DOCUMENT ME!

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DBReference

public DBReference(String abbreviation,
                   String name,
                   String genericUrl)

Creates a new DBReference object.

Parameters:

abbreviation - DOCUMENT ME!

name - DOCUMENT ME!

genericUrl - DOCUMENT ME!

DBReference

public DBReference(String abbreviation,
                   String name,
                   String urlSyntax,
                   String genericUrl,
                   String object)

Creates a new DBReference object.

Parameters:

abbreviation - DOCUMENT ME!

name - DOCUMENT ME!

urlSyntax - DOCUMENT ME!

genericUrl - DOCUMENT ME!

object - DOCUMENT ME!

Method Detail

getAbbreviation

public String getAbbreviation()

DOCUMENT ME!

Returns:

DOCUMENT ME!

getFullName

public String getFullName()

DOCUMENT ME!

Returns:

DOCUMENT ME!

getGenericURL

public URL getGenericURL()
                  throws MalformedURLException

DOCUMENT ME!

Returns:

DOCUMENT ME!

Throws:

MalformedURLException - DOCUMENT ME!

getObject

public String getObject()

DOCUMENT ME!

Returns:

DOCUMENT ME!

getSynonyms

public List<String> getSynonyms()

DOCUMENT ME!

Returns:

DOCUMENT ME!

getQueryURL

public URL getQueryURL(String entry)
                throws MalformedURLException

DOCUMENT ME!

Parameters:

entry - DOCUMENT ME!

Returns:

DOCUMENT ME!

Throws:

MalformedURLException - DOCUMENT ME!

setSynonym

public void setSynonym(List<String> synonym)

DOCUMENT ME!

Parameters:

synonym - DOCUMENT ME!