Package cytoscape.util

This package contains utility classes which are deemed generally useful, but which do not clearly belong to any other package.

See:
Description

Interface Summary

ModuleProperties
MonitoredTask
Scaler	Used to scale a list of values to [a,b]
TopoGraphNode	Represents a node in a topological graph.

Class Summary

AbstractScaler	Used to scale a list of values to [a,b]
BioDataServerUtil
BookmarksUtil	Utility methods for getting entries in the bookmark object.
ColorUtil	Color utility class to convert Java color object to string and vice versa.
CreditScreen
CyColorChooser	This is an annoying re-implementation of JColorChooser.showDialog() that remembers recently used colors between invocations of the chooser dialog.
CyFileFilter	A convenience implementation of FileFilter that filters out all files except for those type extensions that it knows about.
CyNetworkNaming
CytoscapeAction
CytoscapeMenuBar
CytoscapeProgressMonitor	CytoscapeProgressMonitor.
CytoscapeToolBar
Exec
FileUtil	Provides a platform-dependent way to open files.
GMLFileFilter	FileFilter for Reading in GML Files.
GraphSetUtils	Class contains various static methods to perform set-like operations on graph.
IndeterminateProgressBar	This class creates a dialog with a JProgressBar in indeterminate state.
JnlpWriterUtil
MacAppConfig	Configures the Mac OS X Info.plist file associated with Cytoscape.
MathUtil
MemoryReporter	A class used to track JVM memory usage.
MinMaxDouble	find the min and max of a 1- or 2-d aarray of doubles.
MinMaxInt	find the min and max of a 1- or 2-d array of ints.
Misc
ModulePropertiesImpl
MutableBool
MutableInt
MutableString
NestedNetworkViewUpdater	This class manages images that represent nested networks.
NNFFileFilter	File filter for Nested Network Format (NNF).
OpenBrowser
PercentUtil	Helper Class for Calculating Percentage of Multi-Step Processes.
PropUtil	A stateless utility class that makes it easy to parse int and boolean values from a Properties object.
ProxyHandler
RecentlyOpenedTracker	A class to keep track of a short list of recently opened URLs.
ScalerFactory
SIFFileFilter	FileFilter for Reading in Cytoscape SIF Files.
SwingWorker	This is the 3rd version of SwingWorker (also known as SwingWorker 3), an abstract class that you subclass to perform GUI-related work in a dedicated thread.
TopologicalSort	Implements topological sorting of nodes in a graph.
Transform	Apply XSLT to an XML document
URLUtil
XGMMLFileFilter	FileFilter for Reading in XGMML Files.
ZipUtil	Compression-related methods mainly for Session Writer. The created zip files can be decompressed by any zip utilities.

Enum Summary

ScalingMethod

Package cytoscape.util Description

This package contains utility classes which are deemed generally useful, but which do not clearly belong to any other package. For the most part they are short and simple.