Uses of Package
cytoscape.data.ontology

Packages that use cytoscape.data.ontology

cytoscape.data.ontology
cytoscape.data.ontology.readers
cytoscape.data.servers	An interface for annotation data providers and various implementations of that interface, including both remote and in-process implementations.

Classes in cytoscape.data.ontology used by cytoscape.data.ontology

DBReference
Represents an entry in the database cross reference.

GeneOntology
Gene Ontology object based on general Ontology.

GeneOntology.GOAspect

GOTerm
A Gene Ontology term.

Ontology
General Ontology class which implements Ontology interface from BioJava project.
This class representes a general and simple ontology class. This implementation uses
CyNetwork and CyAttributes for its actual data storage.

OntologyTerm
Simple in-memory implementation of an ontology term based on BioJava's interface.

OntologyTerm.SynonymType

Classes in cytoscape.data.ontology used by cytoscape.data.ontology.readers

DBReference
Represents an entry in the database cross reference.

Classes in cytoscape.data.ontology used by cytoscape.data.servers

DBCrossReferences
Database cress reference.

Ontology
General Ontology class which implements Ontology interface from BioJava project.
This class representes a general and simple ontology class. This implementation uses
CyNetwork and CyAttributes for its actual data storage.