Uses of Package
cytoscape.data

Packages that use cytoscape.data

cytoscape	Core Cytoscape Classes.
cytoscape.data	Basic data classes used by Cytoscape.
cytoscape.data.ontology.readers
cytoscape.data.readers	Reader classes for the basic data types in cytoscape.data.
cytoscape.data.writers
cytoscape.dialogs	UI classes for performing some action, generally more complicated than those contained in the cytoscape.actions package.
cytoscape.giny
cytoscape.view	Classes that provide a window to display a graph and UI components connected to that window, such as the menus.
cytoscape.visual.calculators	Objects that calculate from the data attributes the value for one visual attribute, such as color, shape, or size.
cytoscape.visual.ui	Top-level UI components for the cytoscape.visual package.
cytoscape.visual.ui.editors.continuous

Classes in cytoscape.data used by cytoscape

CyAttributes
CyAttributes provides access to network, node, and edge attributes within Cytoscape.

ExpressionData
This class provides a reader for the common file format for expression data and an interface to access the data.

ImportHandler
Central registry for all Cytoscape import classes.

SelectEventListener
Listener for SelectEvents fired by a SelectFilter object.

SelectFilter
This class implements the ability to set the selected state of every node or edge in a GraphPerspective.

Classes in cytoscape.data used by cytoscape.data

AttributeFilter
Interface for defining CyEdge-based filters used for determining which Edges should be used for a particular operation, such as CyAttributesUtils.copyAttributes().

AttributeValueVisitor
Interface for defining attribute value visitors--operations to perform on each attribute value using CyAttributesUtils.traverseAttributeValues().

CyAttributes
CyAttributes provides access to network, node, and edge attributes within Cytoscape.

CyAttributesUtils.AttributeType

mRNAMeasurement

SelectEvent
Events that are fired when the selected state of a Node or Edge, or a group of Nodes or Edges, is changed.

SelectEventListener
Listener for SelectEvents fired by a SelectFilter object.

SelectFilter
This class implements the ability to set the selected state of every node or edge in a GraphPerspective.

Classes in cytoscape.data used by cytoscape.data.ontology.readers

CyAttributes
CyAttributes provides access to network, node, and edge attributes within Cytoscape.

Classes in cytoscape.data used by cytoscape.data.readers

CyAttributes
CyAttributes provides access to network, node, and edge attributes within Cytoscape.

Interaction
Interaction.java: protein-protein or protein-DNA: parse text file, encapsulate

Classes in cytoscape.data used by cytoscape.data.writers

CyAttributes
CyAttributes provides access to network, node, and edge attributes within Cytoscape.

Classes in cytoscape.data used by cytoscape.dialogs

CyAttributes
CyAttributes provides access to network, node, and edge attributes within Cytoscape.

ExpressionData
This class provides a reader for the common file format for expression data and an interface to access the data.

Classes in cytoscape.data used by cytoscape.giny

SelectEventListener
Listener for SelectEvents fired by a SelectFilter object.

SelectFilter
This class implements the ability to set the selected state of every node or edge in a GraphPerspective.

Classes in cytoscape.data used by cytoscape.view

SelectEvent
Events that are fired when the selected state of a Node or Edge, or a group of Nodes or Edges, is changed.

SelectEventListener
Listener for SelectEvents fired by a SelectFilter object.

SelectFilter
This class implements the ability to set the selected state of every node or edge in a GraphPerspective.

Classes in cytoscape.data used by cytoscape.visual.calculators

CyAttributes
CyAttributes provides access to network, node, and edge attributes within Cytoscape.

Classes in cytoscape.data used by cytoscape.visual.ui

CyAttributes
CyAttributes provides access to network, node, and edge attributes within Cytoscape.

Classes in cytoscape.data used by cytoscape.visual.ui.editors.continuous

CyAttributes
CyAttributes provides access to network, node, and edge attributes within Cytoscape.