Hierarchy For All Packages

Package Hierarchies:

• org.cytoscape.app,
• org.cytoscape.app.swing,
• org.cytoscape.application,
• org.cytoscape.application.events,
• org.cytoscape.application.swing,
• org.cytoscape.application.swing.events,
• org.cytoscape.equations,
• org.cytoscape.event,
• org.cytoscape.group,
• org.cytoscape.group.data,
• org.cytoscape.group.events,
• org.cytoscape.io,
• org.cytoscape.io.datasource,
• org.cytoscape.io.read,
• org.cytoscape.io.util,
• org.cytoscape.io.webservice,
• org.cytoscape.io.webservice.client,
• org.cytoscape.io.webservice.events,
• org.cytoscape.io.webservice.swing,
• org.cytoscape.io.write,
• org.cytoscape.model,
• org.cytoscape.model.events,
• org.cytoscape.model.subnetwork,
• org.cytoscape.property,
• org.cytoscape.property.bookmark,
• org.cytoscape.service.util,
• org.cytoscape.session,
• org.cytoscape.session.events,
• org.cytoscape.task,
• org.cytoscape.task.analyze,
• org.cytoscape.task.create,
• org.cytoscape.task.destroy,
• org.cytoscape.task.edit,
• org.cytoscape.task.hide,
• org.cytoscape.task.read,
• org.cytoscape.task.select,
• org.cytoscape.task.visualize,
• org.cytoscape.task.write,
• org.cytoscape.util.swing,
• org.cytoscape.view.layout,
• org.cytoscape.view.model,
• org.cytoscape.view.model.events,
• org.cytoscape.view.presentation,
• org.cytoscape.view.presentation.customgraphics,
• org.cytoscape.view.presentation.events,
• org.cytoscape.view.presentation.property,
• org.cytoscape.view.presentation.property.values,
• org.cytoscape.view.vizmap,
• org.cytoscape.view.vizmap.events,
• org.cytoscape.view.vizmap.gui,
• org.cytoscape.view.vizmap.gui.editor,
• org.cytoscape.view.vizmap.gui.event,
• org.cytoscape.view.vizmap.gui.util,
• org.cytoscape.view.vizmap.mappings,
• org.cytoscape.work,
• org.cytoscape.work.swing,
• org.cytoscape.work.swing.undo,
• org.cytoscape.work.undo,
• org.cytoscape.work.util

Class Hierarchy

• java.lang.Object
  • javax.swing.AbstractAction (implements javax.swing.Action, java.lang.Cloneable, java.io.Serializable)
    • org.cytoscape.application.swing.AbstractCyAction (implements org.cytoscape.application.swing.CyAction)
  • org.cytoscape.work.util.AbstractBounded<N>
    • org.cytoscape.work.util.BoundedDouble
    • org.cytoscape.work.util.BoundedFloat
    • org.cytoscape.work.util.BoundedInteger
    • org.cytoscape.work.util.BoundedLong
  • org.cytoscape.util.swing.AbstractCellEditor (implements javax.swing.CellEditor)
    • org.cytoscape.util.swing.JTreeTable.TreeTableCellEditor (implements javax.swing.table.TableCellEditor)
  • org.cytoscape.property.AbstractConfigDirPropsReader (implements org.cytoscape.property.CyProperty<P>)
  • org.cytoscape.service.util.AbstractCyActivator
  • org.cytoscape.app.AbstractCyApp
    • org.cytoscape.app.swing.AbstractCySwingApp
  • org.cytoscape.work.undo.AbstractCyEdit
    • org.cytoscape.view.layout.LayoutEdit
  • org.cytoscape.event.AbstractCyEvent<T> (implements org.cytoscape.event.CyEvent<T>)
    • org.cytoscape.model.events.AboutToRemoveEdgesEvent
    • org.cytoscape.model.events.AboutToRemoveNodesEvent
    • org.cytoscape.event.AbstractCyPayloadEvent<T,P> (implements org.cytoscape.event.CyPayloadEvent<S,P>)
      • org.cytoscape.view.model.events.AboutToRemoveEdgeViewsEvent
      • org.cytoscape.view.model.events.AboutToRemoveNodeViewsEvent
      • org.cytoscape.model.events.AddedEdgesEvent
      • org.cytoscape.view.model.events.AddedEdgeViewsEvent
      • org.cytoscape.model.events.AddedNodesEvent
      • org.cytoscape.view.model.events.AddedNodeViewsEvent
      • org.cytoscape.model.events.RowsCreatedEvent
      • org.cytoscape.model.events.RowsSetEvent
      • org.cytoscape.view.vizmap.events.VisualMappingFunctionChangedEvent
      • org.cytoscape.view.vizmap.events.VisualStyleChangedEvent
    • org.cytoscape.model.events.ColumnCreatedEvent
    • org.cytoscape.model.events.ColumnDeletedEvent
    • org.cytoscape.model.events.ColumnNameChangedEvent
    • org.cytoscape.application.events.CyShutdownEvent
    • org.cytoscape.application.events.CyStartEvent
    • org.cytoscape.application.swing.events.CytoPanelComponentSelectedEvent
    • org.cytoscape.application.swing.events.CytoPanelStateChangedEvent
    • org.cytoscape.io.webservice.events.DataImportFinishedEvent<T>
    • org.cytoscape.view.model.events.FitContentEvent
    • org.cytoscape.view.model.events.FitSelectedEvent
    • org.cytoscape.group.events.GroupAboutToBeDestroyedEvent
    • org.cytoscape.group.events.GroupAboutToBeRemovedEvent
    • org.cytoscape.group.events.GroupAboutToCollapseEvent
    • org.cytoscape.group.events.GroupAddedEvent
    • org.cytoscape.group.events.GroupAddedToNetworkEvent
    • org.cytoscape.group.events.GroupCollapsedEvent
    • org.cytoscape.group.events.GroupEdgesAddedEvent
    • org.cytoscape.group.events.GroupEdgesRemovedEvent
    • org.cytoscape.group.events.GroupNodesAddedEvent
    • org.cytoscape.group.events.GroupNodesRemovedEvent
    • org.cytoscape.view.vizmap.gui.event.LexiconStateChangedEvent
    • org.cytoscape.model.events.NetworkAboutToBeDestroyedEvent
    • org.cytoscape.model.events.NetworkAddedEvent
    • org.cytoscape.model.events.NetworkDestroyedEvent
    • org.cytoscape.view.model.events.NetworkViewAboutToBeDestroyedEvent
    • org.cytoscape.view.model.events.NetworkViewAddedEvent
    • org.cytoscape.view.model.events.NetworkViewDestroyedEvent
    • org.cytoscape.application.swing.events.PreferencesUpdatedEvent
    • org.cytoscape.property.PropertyUpdatedEvent
    • org.cytoscape.model.events.RemovedEdgesEvent
    • org.cytoscape.model.events.RemovedNodesEvent
    • org.cytoscape.view.presentation.events.RenderingEngineAboutToBeRemovedEvent
    • org.cytoscape.view.presentation.events.RenderingEngineAddedEvent
    • org.cytoscape.io.webservice.events.SearchFinishedEvent<T>
    • org.cytoscape.session.events.SessionAboutToBeSavedEvent
    • org.cytoscape.session.events.SessionLoadedEvent
    • org.cytoscape.session.events.SessionSavedEvent
    • org.cytoscape.application.events.SetCurrentNetworkEvent
    • org.cytoscape.application.events.SetCurrentNetworkViewEvent
    • org.cytoscape.application.events.SetCurrentRenderingEngineEvent
    • org.cytoscape.view.vizmap.events.SetCurrentVisualStyleEvent
    • org.cytoscape.model.events.SetNetworkPointerEvent
    • org.cytoscape.application.events.SetSelectedNetworksEvent
    • org.cytoscape.application.events.SetSelectedNetworkViewsEvent
    • org.cytoscape.model.events.TableAboutToBeDeletedEvent
    • org.cytoscape.model.events.TableAddedEvent
    • org.cytoscape.model.events.TableDeletedEvent
    • org.cytoscape.model.events.TablePrivacyChangedEvent
    • org.cytoscape.model.events.TableTitleChangedEvent
    • org.cytoscape.model.events.UnsetNetworkPointerEvent
    • org.cytoscape.view.model.events.UpdateNetworkPresentationEvent
    • org.cytoscape.view.vizmap.events.VisualStyleAboutToBeRemovedEvent
    • org.cytoscape.view.vizmap.events.VisualStyleAddedEvent
    • org.cytoscape.view.vizmap.events.VisualStyleSetEvent
  • org.cytoscape.task.AbstractEdgeViewTaskFactory (implements org.cytoscape.task.EdgeViewTaskFactory)
  • org.cytoscape.equations.AbstractFunction (implements org.cytoscape.equations.Function)
  • org.cytoscape.io.read.AbstractInputStreamTaskFactory (implements org.cytoscape.io.read.InputStreamTaskFactory)
  • org.cytoscape.view.layout.AbstractLayoutAlgorithm (implements org.cytoscape.view.layout.CyLayoutAlgorithm)
  • org.cytoscape.task.AbstractNetworkCollectionTaskFactory (implements org.cytoscape.task.NetworkCollectionTaskFactory)
  • org.cytoscape.task.AbstractNetworkTaskFactory (implements org.cytoscape.task.NetworkTaskFactory)
  • org.cytoscape.task.AbstractNetworkViewCollectionTaskFactory (implements org.cytoscape.task.NetworkViewCollectionTaskFactory)
  • org.cytoscape.task.AbstractNetworkViewLocationTaskFactory (implements org.cytoscape.task.NetworkViewLocationTaskFactory)
  • org.cytoscape.task.AbstractNetworkViewTaskFactory (implements org.cytoscape.task.NetworkViewTaskFactory)
  • org.cytoscape.equations.AbstractNode (implements org.cytoscape.equations.TreeNode)
  • org.cytoscape.task.AbstractNodeViewTaskFactory (implements org.cytoscape.task.NodeViewTaskFactory)
  • org.cytoscape.task.AbstractTableCellTaskFactory (implements org.cytoscape.task.TableCellTaskFactory)
  • org.cytoscape.task.AbstractTableColumnTaskFactory (implements org.cytoscape.task.TableColumnTaskFactory)
  • javax.swing.table.AbstractTableModel (implements java.io.Serializable, javax.swing.table.TableModel)
    • org.cytoscape.util.swing.TreeTableModelAdapter
  • org.cytoscape.task.AbstractTableTaskFactory (implements org.cytoscape.task.TableTaskFactory)
  • org.cytoscape.work.AbstractTask (implements org.cytoscape.work.Task)
    • org.cytoscape.task.AbstractEdgeViewTask
    • org.cytoscape.view.layout.AbstractLayoutTask
      • org.cytoscape.view.layout.AbstractPartitionLayoutTask
    • org.cytoscape.task.AbstractNetworkCollectionTask
    • org.cytoscape.task.AbstractNetworkTask
    • org.cytoscape.task.AbstractNetworkViewCollectionTask
    • org.cytoscape.task.AbstractNetworkViewTask
    • org.cytoscape.task.AbstractNodeViewTask
    • org.cytoscape.task.AbstractRowTask
    • org.cytoscape.task.AbstractTableCellTask
    • org.cytoscape.task.AbstractTableColumnTask
    • org.cytoscape.task.AbstractTableTask
  • org.cytoscape.work.AbstractTaskFactory (implements org.cytoscape.work.TaskFactory)
  • org.cytoscape.work.AbstractTaskManager<T,C> (implements org.cytoscape.work.TaskManager<T,C>)
  • org.cytoscape.application.swing.AbstractToolBarComponent (implements org.cytoscape.application.swing.ToolBarComponent)
  • org.cytoscape.util.swing.AbstractTreeTableModel (implements org.cytoscape.util.swing.TreeTableModel)
  • org.cytoscape.work.AbstractTunableHandler (implements org.cytoscape.work.TunableHandler)
    • org.cytoscape.work.swing.AbstractGUITunableHandler (implements org.cytoscape.work.swing.GUITunableHandler)
  • org.cytoscape.work.AbstractTunableInterceptor<T>
  • org.cytoscape.application.swing.AbstractViewUpdater<S> (implements org.cytoscape.model.events.RowsSetListener)
  • org.cytoscape.view.vizmap.mappings.AbstractVisualMappingFunction<K,V> (implements org.cytoscape.view.vizmap.VisualMappingFunction<K,V>)
  • org.cytoscape.view.model.AbstractVisualProperty<T> (implements org.cytoscape.view.model.VisualProperty<T>)
    • org.cytoscape.view.presentation.property.ArrowShapeVisualProperty
    • org.cytoscape.view.presentation.property.BooleanVisualProperty
    • org.cytoscape.view.presentation.property.DefaultVisualizableVisualProperty
    • org.cytoscape.view.presentation.property.DoubleVisualProperty
    • org.cytoscape.view.presentation.property.EdgeBendVisualProperty
    • org.cytoscape.view.presentation.property.FontVisualProperty
    • org.cytoscape.view.presentation.property.IntegerVisualProperty
    • org.cytoscape.view.presentation.property.LineTypeVisualProperty
    • org.cytoscape.view.presentation.property.NodeShapeVisualProperty
    • org.cytoscape.view.presentation.property.NullVisualProperty
    • org.cytoscape.view.presentation.property.PaintVisualProperty
    • org.cytoscape.view.presentation.property.StringVisualProperty
  • org.cytoscape.view.vizmap.gui.editor.AbstractVisualPropertyEditor<T> (implements org.cytoscape.view.vizmap.gui.editor.VisualPropertyEditor<T>)
  • org.cytoscape.view.presentation.property.values.AbstractVisualPropertyValue (implements org.cytoscape.view.presentation.property.values.VisualPropertyValue)
  • org.cytoscape.io.webservice.client.AbstractWebServiceClient (implements org.cytoscape.io.webservice.WebServiceClient)
    • org.cytoscape.io.webservice.swing.AbstractWebServiceGUIClient (implements org.cytoscape.io.webservice.swing.WebServiceGUIClient)
  • org.cytoscape.application.swing.ActionEnableSupport
  • org.cytoscape.equations.ArgDescriptor
  • org.cytoscape.property.bookmark.Attribute
  • org.cytoscape.io.BasicCyFileFilter (implements org.cytoscape.io.CyFileFilter)
  • org.cytoscape.work.BasicTunableHandlerFactory<T> (implements org.cytoscape.work.TunableHandlerFactory<T>)
    • org.cytoscape.work.swing.SimpleGUITunableHandlerFactory<T> (implements org.cytoscape.work.swing.GUITunableHandlerFactory<T>)
  • org.cytoscape.view.presentation.property.BasicVisualLexicon (implements org.cytoscape.view.model.VisualLexicon)
  • org.cytoscape.property.bookmark.Bookmarks
  • org.cytoscape.view.vizmap.mappings.BoundaryRangeValues<T>
  • org.cytoscape.property.bookmark.Category
  • org.cytoscape.equations.CodeAndSourceLocation
  • org.cytoscape.util.swing.ColumnResizer
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.AbstractButton (implements java.awt.ItemSelectable, javax.swing.SwingConstants)
          • javax.swing.JButton (implements javax.accessibility.Accessible)
            • org.cytoscape.util.swing.DropDownMenuButton
        • javax.swing.JList<E> (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • org.cytoscape.util.swing.CheckBoxJList (implements javax.swing.event.ListSelectionListener)
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • org.cytoscape.util.swing.BasicCollapsiblePanel
          • org.cytoscape.util.swing.JStatusBar
        • javax.swing.JTable (implements javax.accessibility.Accessible, javax.swing.event.CellEditorListener, javax.swing.event.ListSelectionListener, javax.swing.event.RowSorterListener, javax.swing.Scrollable, javax.swing.event.TableColumnModelListener, javax.swing.event.TableModelListener)
          • org.cytoscape.util.swing.JTreeTable
  • org.cytoscape.view.vizmap.mappings.ContinuousMappingPoint<K,V>
  • org.cytoscape.view.model.ContinuousRange<T> (implements org.cytoscape.view.model.Range<T>)
  • org.cytoscape.util.swing.CyColorChooser
  • org.cytoscape.application.swing.CyMenuItem
  • org.cytoscape.session.CySession
  • org.cytoscape.session.CySession.Builder
  • org.cytoscape.model.CyTableUtil
  • org.cytoscape.property.bookmark.DataSource
  • org.cytoscape.io.datasource.DefaultDataSource (implements org.cytoscape.io.datasource.DataSource)
  • org.cytoscape.view.model.DiscreteRange<T> (implements org.cytoscape.view.model.Range<T>)
  • org.cytoscape.view.layout.EdgeWeighter
  • org.cytoscape.equations.Equation
  • org.cytoscape.equations.EquationUtil
  • javax.swing.filechooser.FileFilter
    • org.cytoscape.util.swing.FileChooserFilter
  • org.cytoscape.equations.FunctionUtil
  • org.cytoscape.equations.IdentDescriptor
  • org.cytoscape.util.swing.JMenuTracker
  • org.cytoscape.view.layout.LayoutEdge (implements java.lang.Comparable<T>)
  • org.cytoscape.view.layout.LayoutNode (implements java.lang.Comparable<T>)
  • org.cytoscape.view.layout.LayoutPartition
  • org.cytoscape.view.layout.LayoutPoint
  • org.cytoscape.work.util.ListMultipleSelection<T>
  • org.cytoscape.work.util.ListSingleSelection<T>
  • org.cytoscape.util.swing.MenuGravityTracker (implements org.cytoscape.util.swing.GravityTracker)
  • org.cytoscape.property.bookmark.ObjectFactory
  • org.cytoscape.view.layout.PartitionUtil
  • org.cytoscape.util.swing.PopupMenuGravityTracker (implements org.cytoscape.util.swing.GravityTracker)
  • org.cytoscape.view.vizmap.gui.util.PropertySheetUtil
  • org.cytoscape.model.events.RowSetRecord
  • org.cytoscape.property.SimpleCyProperty<P> (implements org.cytoscape.property.CyProperty<P>)
  • org.cytoscape.model.SUIDFactory
  • org.cytoscape.work.TaskIterator (implements java.util.Iterator<E>)
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • org.cytoscape.equations.FunctionError
  • org.cytoscape.view.model.events.ViewChangeRecord<T>
  • org.cytoscape.view.model.VisualLexiconNode (implements java.lang.Comparable<T>)
  • org.cytoscape.view.vizmap.events.VisualMappingFunctionChangeRecord
  • org.cytoscape.view.vizmap.VisualPropertyDependency<T>
  • org.cytoscape.view.presentation.property.VisualPropertyUtil
  • org.cytoscape.view.vizmap.events.VisualStyleChangeRecord

Interface Hierarchy

• org.cytoscape.group.data.Aggregator<T>
• org.cytoscape.view.presentation.property.values.Bend
• org.cytoscape.view.presentation.property.values.BendFactory
• org.cytoscape.property.bookmark.BookmarksUtil
• org.cytoscape.view.vizmap.gui.editor.ContinuousMappingCellRendererFactory
• org.cytoscape.view.vizmap.gui.editor.ContinuousMappingEditor<K,V>
• org.cytoscape.view.presentation.customgraphics.CustomGraphicLayer
  • org.cytoscape.view.presentation.customgraphics.ImageCustomGraphicLayer
  • org.cytoscape.view.presentation.customgraphics.PaintedShape
• org.cytoscape.app.CyAppAdapter
  • org.cytoscape.app.swing.CySwingAppAdapter
• org.cytoscape.application.CyApplicationConfiguration
• org.cytoscape.application.CyApplicationManager
• org.cytoscape.model.CyColumn
• org.cytoscape.view.presentation.customgraphics.CyCustomGraphics<T>
• org.cytoscape.view.presentation.customgraphics.CyCustomGraphicsFactory<T>
• org.cytoscape.model.CyDisposable
  • org.cytoscape.model.CyNetwork (also extends org.cytoscape.model.CyIdentifiable)
    • org.cytoscape.model.subnetwork.CyRootNetwork
    • org.cytoscape.model.subnetwork.CySubNetwork
  • org.cytoscape.view.model.CyNetworkView (also extends org.cytoscape.view.model.View<S>)
  • org.cytoscape.model.subnetwork.CyRootNetwork
  • org.cytoscape.model.subnetwork.CySubNetwork
  • org.cytoscape.view.presentation.RenderingEngine<T>
• org.cytoscape.application.swing.CyEdgeViewContextMenuFactory
• org.cytoscape.event.CyEvent<T>
  • org.cytoscape.event.CyPayloadEvent<S,P>
• org.cytoscape.event.CyEventHelper
• org.cytoscape.io.CyFileFilter
• org.cytoscape.io.CyFileFilterProvider
  • org.cytoscape.io.write.CyNetworkViewWriterFactory
  • org.cytoscape.io.write.CyPropertyWriterFactory
  • org.cytoscape.io.write.CySessionWriterFactory
  • org.cytoscape.io.write.CyTableWriterFactory
  • org.cytoscape.io.write.CyWriterFactory
    • org.cytoscape.io.write.CyNetworkViewWriterFactory
    • org.cytoscape.io.write.CyPropertyWriterFactory
    • org.cytoscape.io.write.CySessionWriterFactory
    • org.cytoscape.io.write.CyTableWriterFactory
    • org.cytoscape.io.write.PresentationWriterFactory
    • org.cytoscape.io.write.VizmapWriterFactory
  • org.cytoscape.io.read.InputStreamTaskFactory
  • org.cytoscape.io.write.PresentationWriterFactory
  • org.cytoscape.io.write.VizmapWriterFactory
• org.cytoscape.group.CyGroup
• org.cytoscape.group.data.CyGroupAggregationManager
• org.cytoscape.group.CyGroupFactory
• org.cytoscape.group.CyGroupManager
• org.cytoscape.application.swing.CyHelpBroker
• org.cytoscape.model.CyIdentifiable
  • org.cytoscape.model.CyEdge
  • org.cytoscape.model.CyNetwork (also extends org.cytoscape.model.CyDisposable)
    • org.cytoscape.model.subnetwork.CyRootNetwork
    • org.cytoscape.model.subnetwork.CySubNetwork
  • org.cytoscape.view.model.CyNetworkView (also extends org.cytoscape.model.CyDisposable, org.cytoscape.view.model.View<S>)
  • org.cytoscape.model.CyNode
  • org.cytoscape.model.subnetwork.CyRootNetwork
  • org.cytoscape.model.subnetwork.CySubNetwork
  • org.cytoscape.model.CyTable
  • org.cytoscape.view.model.View<S>
    • org.cytoscape.view.model.CyNetworkView (also extends org.cytoscape.model.CyDisposable)
• org.cytoscape.view.layout.CyLayoutAlgorithm
• org.cytoscape.view.layout.CyLayoutAlgorithmManager
• org.cytoscape.event.CyListener
  • org.cytoscape.model.events.AboutToRemoveEdgesListener
  • org.cytoscape.view.model.events.AboutToRemoveEdgeViewsListener
  • org.cytoscape.model.events.AboutToRemoveNodesListener
  • org.cytoscape.view.model.events.AboutToRemoveNodeViewsListener
  • org.cytoscape.model.events.AddedEdgesListener
  • org.cytoscape.view.model.events.AddedEdgeViewsListener
  • org.cytoscape.model.events.AddedNodesListener
  • org.cytoscape.view.model.events.AddedNodeViewsListener
  • org.cytoscape.model.events.ColumnCreatedListener
  • org.cytoscape.model.events.ColumnDeletedListener
  • org.cytoscape.model.events.ColumnNameChangedListener
  • org.cytoscape.application.events.CyShutdownListener
  • org.cytoscape.application.events.CyStartListener
  • org.cytoscape.application.swing.events.CytoPanelComponentSelectedListener
  • org.cytoscape.application.swing.events.CytoPanelStateChangedListener
  • org.cytoscape.view.model.events.FitContentListener
  • org.cytoscape.view.model.events.FitSelectedListener
  • org.cytoscape.group.events.GroupAboutToBeDestroyedListener
  • org.cytoscape.group.events.GroupAboutToBeRemovedListener
  • org.cytoscape.group.events.GroupAboutToCollapseListener
  • org.cytoscape.group.events.GroupAddedListener
  • org.cytoscape.group.events.GroupAddedToNetworkListener
  • org.cytoscape.group.events.GroupCollapsedListener
  • org.cytoscape.group.events.GroupEdgesAddedListener
  • org.cytoscape.group.events.GroupEdgesRemovedListener
  • org.cytoscape.group.events.GroupNodesAddedListener
  • org.cytoscape.group.events.GroupNodesRemovedListener
  • org.cytoscape.model.events.NetworkAboutToBeDestroyedListener
  • org.cytoscape.model.events.NetworkAddedListener
  • org.cytoscape.model.events.NetworkDestroyedListener
  • org.cytoscape.view.model.events.NetworkViewAboutToBeDestroyedListener
  • org.cytoscape.view.model.events.NetworkViewAddedListener
  • org.cytoscape.view.model.events.NetworkViewDestroyedListener
  • org.cytoscape.application.swing.events.PreferencesUpdatedListener
  • org.cytoscape.property.PropertyUpdatedListener
  • org.cytoscape.model.events.RemovedEdgesListener
  • org.cytoscape.model.events.RemovedNodesListener
  • org.cytoscape.view.presentation.events.RenderingEngineAddedListener
  • org.cytoscape.model.events.RowsCreatedListener
  • org.cytoscape.model.events.RowsSetListener
  • org.cytoscape.session.events.SessionAboutToBeSavedListener
  • org.cytoscape.session.events.SessionLoadedListener
  • org.cytoscape.session.events.SessionSavedListener
  • org.cytoscape.application.events.SetCurrentNetworkListener
  • org.cytoscape.application.events.SetCurrentNetworkViewListener
  • org.cytoscape.application.events.SetCurrentRenderingEngineListener
  • org.cytoscape.view.vizmap.events.SetCurrentVisualStyleListener
  • org.cytoscape.model.events.SetNetworkPointerListener
  • org.cytoscape.application.events.SetSelectedNetworksListener
  • org.cytoscape.application.events.SetSelectedNetworkViewsListener
  • org.cytoscape.model.events.TableAboutToBeDeletedListener
  • org.cytoscape.model.events.TableAddedListener
  • org.cytoscape.model.events.TableDeletedListener
  • org.cytoscape.model.events.TablePrivacyChangedListener
  • org.cytoscape.model.events.TableTitleChangedListener
  • org.cytoscape.model.events.UnsetNetworkPointerListener
  • org.cytoscape.view.model.events.UpdateNetworkPresentationListener
  • org.cytoscape.view.vizmap.events.VisualMappingFunctionChangedListener
  • org.cytoscape.view.vizmap.events.VisualStyleAboutToBeRemovedListener
  • org.cytoscape.view.vizmap.events.VisualStyleAddedListener
  • org.cytoscape.view.vizmap.events.VisualStyleChangedListener
  • org.cytoscape.view.vizmap.events.VisualStyleSetListener
• org.cytoscape.model.CyNetworkFactory
• org.cytoscape.model.CyNetworkManager
• org.cytoscape.session.CyNetworkNaming
• org.cytoscape.io.read.CyNetworkReaderManager
• org.cytoscape.model.CyNetworkTableManager
• org.cytoscape.application.swing.CyNetworkViewContextMenuFactory
• org.cytoscape.view.model.CyNetworkViewFactory
• org.cytoscape.view.model.CyNetworkViewManager
• org.cytoscape.application.swing.CyNodeViewContextMenuFactory
• org.cytoscape.property.CyProperty<P>
• org.cytoscape.io.read.CyPropertyReaderManager
• org.cytoscape.model.subnetwork.CyRootNetworkManager
• org.cytoscape.model.CyRow
• org.cytoscape.service.util.CyServiceRegistrar
• org.cytoscape.session.CySessionManager
• org.cytoscape.io.read.CySessionReaderManager
• org.cytoscape.application.CyShutdown
• org.cytoscape.application.swing.CySwingApplication
• org.cytoscape.model.CyTableFactory
• org.cytoscape.model.CyTableManager
• org.cytoscape.model.CyTableMetadata
• org.cytoscape.io.read.CyTableReaderManager
• org.cytoscape.application.swing.CytoPanel
• org.cytoscape.application.swing.CytoPanelComponent
• org.cytoscape.application.CyVersion
• org.cytoscape.io.write.CyWriterManager<W>
  • org.cytoscape.io.write.CyNetworkViewWriterManager
  • org.cytoscape.io.write.CyPropertyWriterManager
  • org.cytoscape.io.write.CySessionWriterManager
  • org.cytoscape.io.write.CyTableWriterManager
  • org.cytoscape.io.write.PresentationWriterManager
  • org.cytoscape.io.write.VizmapWriterManager
• org.cytoscape.io.webservice.events.DataImportFinishedListener
• org.cytoscape.io.datasource.DataSource
• org.cytoscape.io.datasource.DataSourceManager
• org.cytoscape.view.vizmap.gui.DefaultViewEditor
• org.cytoscape.view.vizmap.gui.DefaultViewPanel
• org.cytoscape.work.swing.DirectlyPresentableTunableHandler
• org.cytoscape.view.vizmap.gui.util.DiscreteMappingGenerator<V>
• org.cytoscape.task.DynamicTaskFactoryProvisioner
• org.cytoscape.task.EdgeViewTaskFactory
• org.cytoscape.view.vizmap.gui.editor.EditorManager
• org.cytoscape.equations.EquationCompiler
• org.cytoscape.equations.EquationParser
• java.util.EventListener
  • javax.swing.Action
    • org.cytoscape.application.swing.CyAction (also extends javax.swing.event.MenuListener, javax.swing.event.PopupMenuListener)
  • java.awt.event.ActionListener
    • javax.swing.Action
      • org.cytoscape.application.swing.CyAction (also extends javax.swing.event.MenuListener, javax.swing.event.PopupMenuListener)
    • org.cytoscape.application.swing.CyAction (also extends javax.swing.Action, javax.swing.event.MenuListener, javax.swing.event.PopupMenuListener)
  • org.cytoscape.application.swing.CyAction (also extends javax.swing.Action, javax.swing.event.MenuListener, javax.swing.event.PopupMenuListener)
  • org.cytoscape.work.swing.DynamicSubmenuListener (also extends javax.swing.event.MenuListener, javax.swing.event.PopupMenuListener)
  • javax.swing.event.MenuListener
    • org.cytoscape.application.swing.CyAction (also extends javax.swing.Action, javax.swing.event.PopupMenuListener)
    • org.cytoscape.work.swing.DynamicSubmenuListener (also extends javax.swing.event.PopupMenuListener)
  • javax.swing.event.PopupMenuListener
    • org.cytoscape.application.swing.CyAction (also extends javax.swing.Action, javax.swing.event.MenuListener)
    • org.cytoscape.work.swing.DynamicSubmenuListener (also extends javax.swing.event.MenuListener)
• org.cytoscape.util.swing.FileUtil
• org.cytoscape.equations.Function
• org.cytoscape.util.swing.GravityTracker
• org.cytoscape.view.presentation.property.values.Handle
• org.cytoscape.view.presentation.property.values.HandleFactory
• org.cytoscape.equations.Interpreter
• org.cytoscape.view.vizmap.gui.event.LexiconStateChangedListener
• org.cytoscape.view.vizmap.gui.editor.ListEditor
• org.cytoscape.view.vizmap.gui.MappingFunctionFactoryManager
• org.cytoscape.task.NetworkCollectionTaskFactory
  • org.cytoscape.task.analyze.AnalyzeNetworkCollectionTaskFactory
  • org.cytoscape.task.create.CreateNetworkViewTaskFactory
  • org.cytoscape.task.destroy.DestroyNetworkTaskFactory
• org.cytoscape.io.webservice.NetworkImportWebServiceClient
• org.cytoscape.task.NetworkTaskFactory
  • org.cytoscape.task.create.CloneNetworkTaskFactory
  • org.cytoscape.task.edit.ConnectSelectedNodesTaskFactory
  • org.cytoscape.task.destroy.DeleteSelectedNodesAndEdgesTaskFactory
  • org.cytoscape.task.select.DeselectAllEdgesTaskFactory
  • org.cytoscape.task.select.DeselectAllNodesTaskFactory
  • org.cytoscape.task.select.DeselectAllTaskFactory
  • org.cytoscape.task.edit.EditNetworkTitleTaskFactory
  • org.cytoscape.task.select.InvertSelectedEdgesTaskFactory
  • org.cytoscape.task.select.InvertSelectedNodesTaskFactory
  • org.cytoscape.task.create.NewNetworkSelectedNodesAndEdgesTaskFactory
  • org.cytoscape.task.create.NewNetworkSelectedNodesOnlyTaskFactory
  • org.cytoscape.task.select.SelectAdjacentEdgesTaskFactory
  • org.cytoscape.task.select.SelectAllEdgesTaskFactory
  • org.cytoscape.task.select.SelectAllNodesTaskFactory
  • org.cytoscape.task.select.SelectAllTaskFactory
  • org.cytoscape.task.select.SelectConnectedNodesTaskFactory
  • org.cytoscape.task.select.SelectFirstNeighborsTaskFactory
  • org.cytoscape.task.select.SelectFromFileListTaskFactory
• org.cytoscape.task.NetworkViewCollectionTaskFactory
  • org.cytoscape.task.visualize.ApplyPreferredLayoutTaskFactory
  • org.cytoscape.task.visualize.ApplyVisualStyleTaskFactory
  • org.cytoscape.task.destroy.DestroyNetworkViewTaskFactory
• org.cytoscape.task.NetworkViewLocationTaskFactory
• org.cytoscape.task.NetworkViewTaskFactory
  • org.cytoscape.task.write.ExportNetworkImageTaskFactory
  • org.cytoscape.task.write.ExportNetworkViewTaskFactory
  • org.cytoscape.task.edit.GroupNodesTaskFactory
  • org.cytoscape.task.hide.HideSelectedEdgesTaskFactory
  • org.cytoscape.task.hide.HideSelectedNodesTaskFactory
  • org.cytoscape.task.hide.HideSelectedTaskFactory
  • org.cytoscape.task.edit.UnGroupTaskFactory
  • org.cytoscape.task.hide.UnHideAllEdgesTaskFactory
  • org.cytoscape.task.hide.UnHideAllNodesTaskFactory
  • org.cytoscape.task.hide.UnHideAllTaskFactory
• org.cytoscape.task.create.NewEmptyNetworkViewFactory
• org.cytoscape.task.NodeViewTaskFactory
  • org.cytoscape.task.edit.CollapseGroupTaskFactory
  • org.cytoscape.task.edit.ExpandGroupTaskFactory
  • org.cytoscape.task.select.SelectFirstNeighborsNodeViewTaskFactory
  • org.cytoscape.task.edit.UnGroupNodesTaskFactory
• org.cytoscape.view.model.NullDataType
• org.cytoscape.util.swing.OpenBrowser
• org.cytoscape.view.model.Range<T>
• org.cytoscape.io.util.RecentlyOpenedTracker
• org.cytoscape.view.presentation.events.RenderingEngineAboutToBeRemovedListener
• org.cytoscape.view.presentation.RenderingEngineFactory<T>
• org.cytoscape.view.presentation.RenderingEngineManager
• org.cytoscape.task.RowTaskFactory
• org.cytoscape.io.webservice.events.SearchFinishedListener
• org.cytoscape.io.webservice.SearchWebServiceClient
• org.cytoscape.work.ServiceProperties
• org.cytoscape.io.util.StreamUtil
• org.cytoscape.task.TableCellTaskFactory
• org.cytoscape.task.TableColumnTaskFactory
  • org.cytoscape.task.destroy.DeleteColumnTaskFactory
  • org.cytoscape.task.edit.RenameColumnTaskFactory
• org.cytoscape.io.webservice.TableImportWebServiceClient
• org.cytoscape.task.TableTaskFactory
  • org.cytoscape.task.destroy.DeleteTableTaskFactory
  • org.cytoscape.task.write.ExportTableTaskFactory
  • org.cytoscape.task.edit.JoinTablesTaskTaskFactory
  • org.cytoscape.task.edit.MapGlobalToLocalTableTaskFactory
  • org.cytoscape.task.edit.MapTableToNetworkTablesTaskFactory
• org.cytoscape.work.Task
  • org.cytoscape.io.read.CyNetworkReader
  • org.cytoscape.io.read.CyPropertyReader
  • org.cytoscape.io.read.CySessionReader
  • org.cytoscape.io.read.CyTableReader
  • org.cytoscape.io.write.CyWriter
  • org.cytoscape.io.read.VizmapReader
• org.cytoscape.work.TaskFactory
  • org.cytoscape.task.write.ExportSelectedTableTaskFactory
  • org.cytoscape.task.write.ExportVizmapTaskFactory
  • org.cytoscape.task.read.LoadNetworkFileTaskFactory
  • org.cytoscape.task.read.LoadNetworkURLTaskFactory
  • org.cytoscape.task.read.LoadTableFileTaskFactory
  • org.cytoscape.task.read.LoadTableURLTaskFactory
  • org.cytoscape.task.read.LoadVizmapFileTaskFactory
  • org.cytoscape.task.create.NewSessionTaskFactory
  • org.cytoscape.task.read.OpenSessionTaskFactory
  • org.cytoscape.task.write.SaveSessionAsTaskFactory
  • org.cytoscape.task.write.SaveSessionTaskFactory
• org.cytoscape.work.TaskManager<T,C>
  • org.cytoscape.work.swing.DialogTaskManager
  • org.cytoscape.work.swing.PanelTaskManager
  • org.cytoscape.work.SynchronousTaskManager<T>
• org.cytoscape.work.TaskMonitor
• org.cytoscape.application.swing.ToolBarComponent
• javax.swing.tree.TreeModel
  • org.cytoscape.util.swing.TreeTableModel
• org.cytoscape.equations.TreeNode
• org.cytoscape.work.TunableHandler
  • org.cytoscape.work.swing.GUITunableHandler
• org.cytoscape.work.TunableHandlerFactory<T>
  • org.cytoscape.work.swing.GUITunableHandlerFactory<T>
• org.cytoscape.work.TunableMutator<T,S>
• org.cytoscape.work.TunableRecorder<T>
• org.cytoscape.work.TunableSetter
• org.cytoscape.work.TunableValidator
• org.cytoscape.work.undo.UndoSupport
  • org.cytoscape.work.swing.undo.SwingUndoSupport
• org.cytoscape.view.vizmap.gui.editor.ValueEditor<V>
• org.cytoscape.view.vizmap.mappings.ValueTranslator<V,T>
• org.cytoscape.model.VirtualColumnInfo
• org.cytoscape.view.model.Visualizable
• org.cytoscape.view.model.VisualLexicon
• org.cytoscape.view.vizmap.VisualMappingFunction<K,V>
  • org.cytoscape.view.vizmap.mappings.ContinuousMapping<K,V>
  • org.cytoscape.view.vizmap.mappings.DiscreteMapping<K,V>
  • org.cytoscape.view.vizmap.mappings.PassthroughMapping<K,V>
• org.cytoscape.view.vizmap.VisualMappingFunctionFactory
• org.cytoscape.view.vizmap.VisualMappingManager
• org.cytoscape.view.model.VisualProperty<T>
• org.cytoscape.view.vizmap.VisualPropertyDependencyFactory<T>
• org.cytoscape.view.vizmap.gui.editor.VisualPropertyEditor<T>
• org.cytoscape.view.presentation.property.values.VisualPropertyValue
  • org.cytoscape.view.presentation.property.values.ArrowShape
  • org.cytoscape.view.presentation.property.values.LineType
  • org.cytoscape.view.presentation.property.values.NodeShape
• org.cytoscape.view.vizmap.VisualStyle
• org.cytoscape.view.vizmap.VisualStyleFactory
• org.cytoscape.view.vizmap.gui.event.VizMapEventHandler
• org.cytoscape.view.vizmap.gui.event.VizMapEventHandlerManager
• org.cytoscape.view.vizmap.gui.VizMapGUI
• org.cytoscape.io.read.VizmapReaderManager
• org.cytoscape.io.webservice.WebServiceClient
• org.cytoscape.io.webservice.swing.WebServiceGUI
• org.cytoscape.io.webservice.swing.WebServiceGUIClient

Annotation Type Hierarchy

• org.cytoscape.work.Tunable (implements java.lang.annotation.Annotation)
• org.cytoscape.work.ProvidesTitle (implements java.lang.annotation.Annotation)
• org.cytoscape.work.ContainsTunables (implements java.lang.annotation.Annotation)

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • org.cytoscape.model.SavePolicy
    • org.cytoscape.model.CyTableFactory.InitialTableSize
    • org.cytoscape.model.CyTable.Mutability
    • org.cytoscape.model.CyEdge.Type
    • org.cytoscape.io.DataCategory
    • org.cytoscape.group.data.AttributeHandlingType
    • org.cytoscape.view.layout.WeightTypes
    • org.cytoscape.property.CyProperty.SavePolicy
    • org.cytoscape.equations.ArgType
    • org.cytoscape.application.swing.CytoPanelState
    • org.cytoscape.application.swing.CytoPanelName
    • org.cytoscape.work.TunableValidator.ValidationState
    • org.cytoscape.view.vizmap.gui.editor.ContinuousEditorType