BENG 183
Applied Genomic Technologiesucsdlogo
Lecture: Tu/Th at 3:30p - 4:50p in HSS 2305A
Discussion: Th at 5:00p - 5:50p in HSS 2305A

Home Lectures Assignments Resources
Wk Num Date Theme Topics Covered Instructor Lecture Textbook Assignment Additional Reading
0 1 9/27/2012 Introduction Introduction: The revolution of genomics Gabriel Pratt Initial sequencing and analysis of the human genome. Pages 1-16
1 2 9/27/2012 Genome structure Genome size and complexity, CoT curve analysis Trey Ideker Lecture 1 Chapter 1, esp. pp 27-52
3 10/4/2012 Genome Structure Exons/Introns, Repeats Trey Ideker Lecture 2 An integrated encyclopedia of DNA elements in the human genome
2 4 10/9/2012 Gene association GWAS and linkage mapping I Trey Ideker Lecture 3 pp 27-32
5 10/11/2012 Field Trip Tour of the BioGEM Genomics Core on UCSD campus Gary Hardiman
3 6 10/16/2012 Gene association GWAS and linkage mapping II Trey Ideker Lecture 4
7 10/18/2012 DNA sequencing Sanger sequencing reaction, automated sequencing, sequencing by hybridization, DNA synthesis Trey Ideker Lecture 5 pp203-221 Missing Heritability
4 8 10/23/2012 DNA sequencing Next generation methods based on adapter sequencing, pyrosequencing, single molecule sequencing Trey Ideker Lecture 6
9 10/25/2012 DNA sequencing Next generation sequencing methods Trey Ideker Lecture 7
5 10 10/30/2012 DNA sequencing / mRNA expression Assembly / Expression Technologies: Microarrays Trey Ideker Lecture 8 pp. 265-304
11 11/1/2012 Genotyping / mRNA expression Expression Technologies: Microarrays Trey Ideker Lecture 9
6 12 11/6/2012 mRNA expression Microarrays Trey Ideker Lecture 10
13 11/8/2012 Proteomics Protein Expression Trey Ideker Lecture 11
7 14 11/13/2012 Proteomics Protein Tagging and Localization Trey Ideker Lecture 12
15 11/15/2012 MIDTERM ALL PREVIOUSLY COVERED MATERIAL Trey Ideker Textbook Assignment Additional Reading
8 16 11/20/2012 Phenotyping Comprehensive Mutant Libraries Trey Ideker Lecture 13
17 11/22/2012 THANKSGIVING /td>
17 11/27/2012 Phenotyping Comprehensive Mutant Libraries II Trey Ideker Lecture 13
9 18 11/29/2012 Interactions Protein Interactions Trey Ideker Lecture 15 pp. 381 - 404A
10 19 12/4/2012 PRESENTATIONS Trey Ideker
20 12/6/2012 PRESENTATIONS Trey Ideker
12/14/2012 @11:59p PAPERS DUE