Hierarchy For All Packages

Package Hierarchies:

cytoscape, cytoscape.actions, cytoscape.data, cytoscape.data.annotation, cytoscape.data.annotation.readers, cytoscape.data.attr, cytoscape.data.attr.util, cytoscape.data.attr.util.test, cytoscape.data.readers, cytoscape.data.servers, cytoscape.data.servers.ui, cytoscape.data.synonyms, cytoscape.data.synonyms.readers, cytoscape.data.writers, cytoscape.dialogs, cytoscape.dialogs.preferences, cytoscape.ding, cytoscape.foo, cytoscape.generated, cytoscape.generated.impl, cytoscape.generated.impl.runtime, cytoscape.generated2, cytoscape.generated2.impl, cytoscape.generated2.impl.runtime, cytoscape.giny, cytoscape.init, cytoscape.layout, cytoscape.plugin, cytoscape.util, cytoscape.util.shadegrown, cytoscape.util.swing, cytoscape.view, cytoscape.view.cytopanels, cytoscape.visual, cytoscape.visual.calculators, cytoscape.visual.mappings, cytoscape.visual.mappings.continuous, cytoscape.visual.mappings.discrete, cytoscape.visual.parsers, cytoscape.visual.ui

Class Hierarchy

• java.lang.Object
  • javax.swing.AbstractAction (implements javax.swing.Action, java.lang.Cloneable, java.io.Serializable)
    • cytoscape.actions.AlignHorizontalAction
    • cytoscape.actions.AlignVerticalAction
    • cytoscape.actions.AnimatedLayoutAction
    • cytoscape.data.annotation.AnnotationGui.Gui.DeleteCreatedObjectsAction
    • cytoscape.data.annotation.AnnotationGui.Gui.DrawSharedEdgesAnnotationAction
    • cytoscape.data.annotation.AnnotationGui.Gui.LayoutByAnnotationAction
    • cytoscape.data.annotation.AnnotationGui.Gui.OKAction
    • cytoscape.util.CytoscapeAction
      • cytoscape.actions.AlphabeticalSelectionAction (implements java.awt.event.ActionListener)
      • cytoscape.data.annotation.AnnotationGui
      • cytoscape.actions.BackgroundColorAction
      • cytoscape.actions.BirdsEyeViewAction (implements java.beans.PropertyChangeListener)
      • cytoscape.actions.CloneGraphInNewWindowAction
      • cytoscape.actions.CreateNetworkViewAction
      • cytoscape.actions.CytoPanelAction (implements cytoscape.view.cytopanels.CytoPanelListener)
      • cytoscape.actions.DeselectAllAction
      • cytoscape.actions.DeSelectAllEdgesAction
      • cytoscape.actions.DeSelectAllNodesAction
      • cytoscape.actions.DestroyNetworkAction
      • cytoscape.actions.DestroyNetworkViewAction
      • cytoscape.actions.DestroySelectedAction
      • cytoscape.actions.ExitAction
      • cytoscape.actions.ExportAction
      • cytoscape.actions.ExportAsGMLAction
      • cytoscape.actions.ExportAsGraphicsAction
      • cytoscape.actions.ExportAsInteractionsAction
      • cytoscape.actions.ExportAsXGMMLAction
      • cytoscape.actions.ExportEdgeAttributesAction
      • cytoscape.actions.ExportNodeAttributesAction
      • cytoscape.actions.ExportVizmapAction
      • cytoscape.actions.FitContentAction
      • cytoscape.actions.GraphObjectSelectionAction
      • cytoscape.actions.HideSelectedAction
      • cytoscape.actions.HideSelectedEdgesAction
      • cytoscape.actions.HideSelectedNodesAction
      • cytoscape.actions.ImportBioDataServerAction
      • cytoscape.actions.ImportEdgeAttributesAction
      • cytoscape.actions.ImportExpressionMatrixAction
      • cytoscape.actions.ImportGraphFileAction
      • cytoscape.actions.ImportNodeAttributesAction
      • cytoscape.actions.ImportVizmapAction
      • cytoscape.actions.InvertSelectedEdgesAction
      • cytoscape.actions.InvertSelectedNodesAction
      • cytoscape.actions.ListFromFileSelectionAction
      • cytoscape.actions.MapOntologyAction
      • cytoscape.actions.NewSessionAction
      • cytoscape.actions.NewWindowSelectedNodesEdgesAction
      • cytoscape.actions.NewWindowSelectedNodesOnlyAction
      • cytoscape.actions.OpenSessionAction
      • cytoscape.actions.PreferenceAction
      • cytoscape.actions.PrintAction
      • cytoscape.actions.SaveSessionAction
      • cytoscape.actions.SaveSessionAsAction
      • cytoscape.actions.SelectAllAction
      • cytoscape.actions.SelectAllEdgesAction
      • cytoscape.actions.SelectAllNodesAction
      • cytoscape.actions.SelectFirstNeighborsAction
      • cytoscape.actions.SetVisualPropertiesAction
      • cytoscape.actions.ShowAllAction
      • cytoscape.dialogs.ShrinkExpandGraph
      • cytoscape.actions.ToggleVisualMapperAction
      • cytoscape.actions.UnHideSelectedEdgesAction
      • cytoscape.actions.UnHideSelectedNodesAction
      • cytoscape.actions.ZoomAction
      • cytoscape.actions.ZoomSelectedAction
    • cytoscape.actions.DeleteSelectedAction
    • cytoscape.dialogs.EdgeAttributesPopupDetails.OKAction
    • cytoscape.actions.EdgeManipulationAction
    • cytoscape.dialogs.ExpressionDataPopupTable.OKAction
    • cytoscape.dialogs.GinyEdgeControlDialog.OKAction
    • cytoscape.actions.HelpAboutAction
    • cytoscape.dialogs.IconPopupButton.ApplyIconAction
    • cytoscape.dialogs.IconPopupButton.CancelIconAction
    • cytoscape.dialogs.LabelTextPanel.BoxAction
    • cytoscape.actions.LayoutAction
    • cytoscape.dialogs.NewStringPopupDialog.CancelAction
    • cytoscape.dialogs.NewStringPopupDialog.OkAction
    • cytoscape.visual.ui.PopupIconChooser.ApplyIconAction
    • cytoscape.visual.ui.PopupIconChooser.CancelIconAction
    • cytoscape.dialogs.PopupTextArea.OKAction
    • cytoscape.actions.RotateSelectedNodesAction
    • cytoscape.util.UndoManager.RedoAction
    • cytoscape.util.UndoManager.UndoAction
    • cytoscape.actions.UnHideSelectedAction
    • cytoscape.visual.ui.VizMapUI.StyleSelector.DefStyleListener
    • cytoscape.visual.ui.VizMapUI.StyleSelector.DupeStyleListener
    • cytoscape.visual.ui.VizMapUI.StyleSelector.NewStyleListener
    • cytoscape.visual.ui.VizMapUI.StyleSelector.RenStyleListener
    • cytoscape.visual.ui.VizMapUI.StyleSelector.RmStyleListener
  • cytoscape.visual.calculators.AbstractCalculator (implements cytoscape.visual.calculators.Calculator)
    • cytoscape.visual.calculators.EdgeCalculator
      • cytoscape.visual.calculators.GenericEdgeArrowCalculator (implements cytoscape.visual.calculators.EdgeArrowCalculator)
      • cytoscape.visual.calculators.GenericEdgeColorCalculator (implements cytoscape.visual.calculators.EdgeColorCalculator)
      • cytoscape.visual.calculators.GenericEdgeFontFaceCalculator (implements cytoscape.visual.calculators.EdgeFontFaceCalculator)
      • cytoscape.visual.calculators.GenericEdgeFontSizeCalculator (implements cytoscape.visual.calculators.EdgeFontSizeCalculator)
      • cytoscape.visual.calculators.GenericEdgeLabelCalculator (implements cytoscape.visual.calculators.EdgeLabelCalculator)
      • cytoscape.visual.calculators.GenericEdgeLineTypeCalculator (implements cytoscape.visual.calculators.EdgeLineTypeCalculator)
      • cytoscape.visual.calculators.GenericEdgeToolTipCalculator (implements cytoscape.visual.calculators.EdgeToolTipCalculator)
    • cytoscape.visual.calculators.NodeCalculator
      • cytoscape.visual.calculators.GenericNodeColorCalculator (implements cytoscape.visual.calculators.NodeColorCalculator)
      • cytoscape.visual.calculators.GenericNodeFontFaceCalculator (implements cytoscape.visual.calculators.NodeFontFaceCalculator)
      • cytoscape.visual.calculators.GenericNodeFontSizeCalculator (implements cytoscape.visual.calculators.NodeFontSizeCalculator)
      • cytoscape.visual.calculators.GenericNodeLabelCalculator (implements cytoscape.visual.calculators.NodeLabelCalculator)
      • cytoscape.visual.calculators.GenericNodeLabelColorCalculator (implements cytoscape.visual.calculators.NodeLabelColorCalculator)
      • cytoscape.visual.calculators.GenericNodeLineTypeCalculator (implements cytoscape.visual.calculators.NodeLineTypeCalculator)
      • cytoscape.visual.calculators.GenericNodeShapeCalculator (implements cytoscape.visual.calculators.NodeShapeCalculator)
      • cytoscape.visual.calculators.GenericNodeSizeCalculator (implements cytoscape.visual.calculators.NodeSizeCalculator)
      • cytoscape.visual.calculators.GenericNodeToolTipCalculator (implements cytoscape.visual.calculators.NodeToolTipCalculator)
  • cytoscape.visual.calculators.AbstractCalculator.CalculatorUI.AttributeSelectorListener (implements java.awt.event.ItemListener)
  • cytoscape.visual.calculators.AbstractCalculator.MappingListener (implements javax.swing.event.ChangeListener)
  • cytoscape.util.swing.AbstractCellEditor (implements javax.swing.CellEditor)
    • cytoscape.util.swing.JTreeTable.TreeTableCellEditor (implements javax.swing.table.TableCellEditor)
  • javax.xml.bind.helpers.AbstractMarshallerImpl (implements javax.xml.bind.Marshaller)
    • cytoscape.generated.impl.runtime.MarshallerImpl
    • cytoscape.generated2.impl.runtime.MarshallerImpl
  • javax.swing.table.AbstractTableModel (implements java.io.Serializable, javax.swing.table.TableModel)
    • javax.swing.table.DefaultTableModel (implements java.io.Serializable)
      • cytoscape.dialogs.NetworkMetaDataTableModel
    • cytoscape.dialogs.preferences.PluginsTableModel
    • cytoscape.dialogs.preferences.PreferenceTableModel
    • cytoscape.util.swing.TreeTableModelAdapter
  • cytoscape.util.swing.AbstractTreeTableModel (implements cytoscape.util.swing.TreeTableModel)
  • javax.xml.bind.helpers.AbstractUnmarshallerImpl (implements javax.xml.bind.Unmarshaller)
    • cytoscape.generated.impl.runtime.UnmarshallerImpl
    • cytoscape.generated2.impl.runtime.UnmarshallerImpl
  • cytoscape.generated.impl.runtime.AbstractUnmarshallingEventHandlerImpl (implements cytoscape.generated.impl.runtime.UnmarshallingEventHandler)
    • cytoscape.generated.impl.ChildImpl.Unmarshaller
    • cytoscape.generated.impl.ChildTypeImpl.Unmarshaller
    • cytoscape.generated.impl.CysessionImpl.Unmarshaller
    • cytoscape.generated.impl.CysessionTypeImpl.Unmarshaller
    • cytoscape.generated.impl.CytopanelImpl.Unmarshaller
    • cytoscape.generated.impl.CytopanelsImpl.Unmarshaller
    • cytoscape.generated.impl.CytopanelsTypeImpl.Unmarshaller
    • cytoscape.generated.impl.CytopanelTypeImpl.Unmarshaller
    • cytoscape.generated.impl.EdgeImpl.Unmarshaller
    • cytoscape.generated.impl.EdgeTypeImpl.Unmarshaller
    • cytoscape.generated.impl.HiddenEdgesImpl.Unmarshaller
    • cytoscape.generated.impl.HiddenEdgesTypeImpl.Unmarshaller
    • cytoscape.generated.impl.HiddenNodesImpl.Unmarshaller
    • cytoscape.generated.impl.HiddenNodesTypeImpl.Unmarshaller
    • cytoscape.generated.impl.NetworkImpl.Unmarshaller
    • cytoscape.generated.impl.NetworkTreeImpl.Unmarshaller
    • cytoscape.generated.impl.NetworkTreeTypeImpl.Unmarshaller
    • cytoscape.generated.impl.NetworkTypeImpl.Unmarshaller
    • cytoscape.generated.impl.NodeImpl.Unmarshaller
    • cytoscape.generated.impl.NodeTypeImpl.Unmarshaller
    • cytoscape.generated.impl.PanelImpl.Unmarshaller
    • cytoscape.generated.impl.PanelsImpl.Unmarshaller
    • cytoscape.generated.impl.PanelStateImpl.Unmarshaller
    • cytoscape.generated.impl.PanelsTypeImpl.Unmarshaller
    • cytoscape.generated.impl.PanelTypeImpl.Unmarshaller
    • cytoscape.generated.impl.ParentImpl.Unmarshaller
    • cytoscape.generated.impl.ParentTypeImpl.Unmarshaller
    • cytoscape.generated.impl.PluginImpl.Unmarshaller
    • cytoscape.generated.impl.PluginsImpl.Unmarshaller
    • cytoscape.generated.impl.PluginsTypeImpl.Unmarshaller
    • cytoscape.generated.impl.PluginTypeImpl.Unmarshaller
    • cytoscape.generated.impl.SelectedEdgesImpl.Unmarshaller
    • cytoscape.generated.impl.SelectedEdgesTypeImpl.Unmarshaller
    • cytoscape.generated.impl.SelectedNodesImpl.Unmarshaller
    • cytoscape.generated.impl.SelectedNodesTypeImpl.Unmarshaller
    • cytoscape.generated.impl.SelectedPanelImpl.Unmarshaller
    • cytoscape.generated.impl.SessionNoteImpl.Unmarshaller
    • cytoscape.generated.impl.SessionStateImpl.Unmarshaller
    • cytoscape.generated.impl.SessionStateTypeImpl.Unmarshaller
    • cytoscape.generated.impl.ViewableNodesImpl.Unmarshaller
    • cytoscape.generated.impl.ViewableNodesTypeImpl.Unmarshaller
  • cytoscape.generated2.impl.runtime.AbstractUnmarshallingEventHandlerImpl (implements cytoscape.generated2.impl.runtime.UnmarshallingEventHandler)
    • cytoscape.generated2.impl.AnyTypeImpl.Unmarshaller
    • cytoscape.generated2.impl.AttImpl.Unmarshaller
    • cytoscape.generated2.impl.AttTypeImpl.Unmarshaller
    • cytoscape.generated2.impl.CenterImpl.Unmarshaller
    • cytoscape.generated2.impl.CenterTypeImpl.Unmarshaller
    • cytoscape.generated2.impl.ContributorImpl.Unmarshaller
    • cytoscape.generated2.impl.ContributorTypeImpl.Unmarshaller
    • cytoscape.generated2.impl.CoverageImpl.Unmarshaller
    • cytoscape.generated2.impl.CoverageTypeImpl.Unmarshaller
    • cytoscape.generated2.impl.CreatorImpl.Unmarshaller
    • cytoscape.generated2.impl.CreatorTypeImpl.Unmarshaller
    • cytoscape.generated2.impl.DateImpl.Unmarshaller
    • cytoscape.generated2.impl.DateTypeImpl.Unmarshaller
    • cytoscape.generated2.impl.DcmesImpl.Unmarshaller
    • cytoscape.generated2.impl.DescriptionImpl.Unmarshaller
    • cytoscape.generated2.impl.DescriptionTypeImpl.Unmarshaller
    • cytoscape.generated2.impl.EdgeImpl.Unmarshaller
    • cytoscape.generated2.impl.FormatImpl.Unmarshaller
    • cytoscape.generated2.impl.FormatTypeImpl.Unmarshaller
    • cytoscape.generated2.impl.GraphicEdgeImpl.Unmarshaller
    • cytoscape.generated2.impl.GraphicGraphImpl.Unmarshaller
    • cytoscape.generated2.impl.GraphicNodeImpl.Unmarshaller
    • cytoscape.generated2.impl.GraphicsImpl.Unmarshaller
    • cytoscape.generated2.impl.GraphicsTypeImpl.Unmarshaller
    • cytoscape.generated2.impl.GraphImpl.Unmarshaller
    • cytoscape.generated2.impl.IdentifierImpl.Unmarshaller
    • cytoscape.generated2.impl.IdentifierTypeImpl.Unmarshaller
    • cytoscape.generated2.impl.LanguageImpl.Unmarshaller
    • cytoscape.generated2.impl.LanguageTypeImpl.Unmarshaller
    • cytoscape.generated2.impl.LineImpl.Unmarshaller
    • cytoscape.generated2.impl.LineTypeImpl.Unmarshaller
    • cytoscape.generated2.impl.NodeImpl.Unmarshaller
    • cytoscape.generated2.impl.PointImpl.Unmarshaller
    • cytoscape.generated2.impl.PointTypeImpl.Unmarshaller
    • cytoscape.generated2.impl.PublisherImpl.Unmarshaller
    • cytoscape.generated2.impl.PublisherTypeImpl.Unmarshaller
    • cytoscape.generated2.impl.RdfDescriptionImpl.Unmarshaller
    • cytoscape.generated2.impl.RdfDescriptionTypeImpl.Unmarshaller
    • cytoscape.generated2.impl.RdfRDFImpl.Unmarshaller
    • cytoscape.generated2.impl.RdfRDFTypeImpl.Unmarshaller
    • cytoscape.generated2.impl.RelationImpl.Unmarshaller
    • cytoscape.generated2.impl.RelationTypeImpl.Unmarshaller
    • cytoscape.generated2.impl.RightsImpl.Unmarshaller
    • cytoscape.generated2.impl.RightsTypeImpl.Unmarshaller
    • cytoscape.generated2.impl.SimpleEdgeImpl.Unmarshaller
    • cytoscape.generated2.impl.SimpleGraphImpl.Unmarshaller
    • cytoscape.generated2.impl.SimpleNodeImpl.Unmarshaller
    • cytoscape.generated2.impl.SourceImpl.Unmarshaller
    • cytoscape.generated2.impl.SourceTypeImpl.Unmarshaller
    • cytoscape.generated2.impl.SubjectImpl.Unmarshaller
    • cytoscape.generated2.impl.SubjectTypeImpl.Unmarshaller
    • cytoscape.generated2.impl.TitleImpl.Unmarshaller
    • cytoscape.generated2.impl.TitleTypeImpl.Unmarshaller
    • cytoscape.generated2.impl.TypeImpl.Unmarshaller
    • cytoscape.generated2.impl.TypeTypeImpl.Unmarshaller
  • cytoscape.visual.mappings.continuous.AddPointListener (implements java.awt.event.ActionListener)
  • cytoscape.data.annotation.Annotation (implements java.io.Serializable)
  • cytoscape.data.annotation.AnnotationDescription (implements java.io.Serializable)
  • cytoscape.data.annotation.readers.AnnotationFlatFileReader
  • cytoscape.data.annotation.readers.AnnotationXmlReader
  • cytoscape.generated2.impl.AnyTypeImpl (implements cytoscape.generated2.AnyType, com.sun.xml.bind.JAXBObject, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.DcmesImpl (implements cytoscape.generated2.Dcmes, com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • cytoscape.visual.Arrow (implements java.io.Serializable)
  • cytoscape.visual.parsers.ArrowParser (implements cytoscape.visual.parsers.ValueParser)
  • cytoscape.layout.AttributeLayout
  • cytoscape.generated2.impl.AttTypeImpl (implements cytoscape.generated2.AttType, com.sun.xml.bind.JAXBObject, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.AttImpl (implements cytoscape.generated2.Att, com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • cytoscape.view.BasicGraphViewHandler (implements cytoscape.view.GraphViewHandler)
  • cytoscape.data.servers.BioDataServer
  • cytoscape.util.BioDataServerUtil
  • cytoscape.visual.mappings.BoundaryRangeValues
  • cytoscape.visual.CalculatorCatalog
  • cytoscape.visual.CalculatorCatalogFactory
  • cytoscape.visual.calculators.CalculatorFactory
  • cytoscape.visual.CalculatorIO
  • cytoscape.generated2.impl.CenterTypeImpl (implements cytoscape.generated2.CenterType, com.sun.xml.bind.JAXBObject, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.CenterImpl (implements cytoscape.generated2.Center, com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • cytoscape.generated.impl.ChildTypeImpl (implements cytoscape.generated.ChildType, com.sun.xml.bind.JAXBObject, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
    • cytoscape.generated.impl.ChildImpl (implements cytoscape.generated.Child, com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
  • cytoscape.data.servers.clear
  • cytoscape.visual.parsers.ColorParser (implements cytoscape.visual.parsers.ValueParser)
  • coltginy.ColtGraphViewModel (implements giny.view.GraphView)
    • phoebe.PGraphView (implements giny.view.GraphView)
      • cytoscape.giny.PhoebeNetworkView (implements cytoscape.view.CyNetworkView)
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • javax.swing.AbstractButton (implements java.awt.ItemSelectable, javax.swing.SwingConstants)
          • javax.swing.JButton (implements javax.accessibility.Accessible)
            • cytoscape.visual.ui.ValueDisplayer
          • javax.swing.JMenuItem (implements javax.accessibility.Accessible, javax.swing.MenuElement)
            • javax.swing.JMenu (implements javax.accessibility.Accessible, javax.swing.MenuElement)
              • cytoscape.actions.SelectionModeAction
              • cytoscape.actions.SquiggleAction
        • javax.swing.JFileChooser (implements javax.accessibility.Accessible)
          • cytoscape.actions.CheckBoxFileChooser
          • cytoscape.actions.ExpFileChooser
        • javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • javax.swing.DefaultListCellRenderer (implements javax.swing.ListCellRenderer, java.io.Serializable)
            • cytoscape.visual.ui.FontRenderer
        • javax.swing.JMenuBar (implements javax.accessibility.Accessible, javax.swing.MenuElement)
          • cytoscape.util.CytoscapeMenuBar
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • cytoscape.visual.calculators.AbstractCalculator.CalculatorUI
          • cytoscape.data.servers.ui.AnotationPanel
          • cytoscape.dialogs.ColorScaleTable
          • cytoscape.visual.mappings.continuous.ContinuousUI (implements java.awt.event.ActionListener)
          • cytoscape.view.cytopanels.CytoPanelImp (implements javax.swing.event.ChangeListener, cytoscape.view.cytopanels.CytoPanel)
          • cytoscape.visual.ui.DefaultPanel (implements javax.swing.event.ChangeListener)
          • cytoscape.visual.mappings.discrete.DiscreteUI (implements javax.swing.event.ChangeListener)
          • cytoscape.visual.ui.FontChooser
          • cytoscape.dialogs.GraphObjectSelection (implements java.awt.event.ActionListener)
          • cytoscape.dialogs.IconPopupButton (implements java.awt.event.ActionListener)
          • cytoscape.dialogs.IntegerEntryField
          • cytoscape.dialogs.JointIntegerEntry
          • cytoscape.dialogs.LabelTextPanel
          • cytoscape.data.servers.ui.ManifestfileSelectionPanel
          • cytoscape.view.NetworkPanel (implements java.beans.PropertyChangeListener, cytoscape.data.SelectEventListener, javax.swing.event.TreeSelectionListener)
          • cytoscape.dialogs.NewSlider
          • cytoscape.data.servers.ui.OboPanel
          • cytoscape.data.servers.ui.SelectFormatPanel
          • cytoscape.data.servers.ui.SpeciesPanel
          • cytoscape.visual.ui.VizMapTab
            • cytoscape.visual.ui.VizMapAttrTab
            • cytoscape.visual.ui.VizMapFontTab
            • cytoscape.visual.ui.VizMapSizeTab
        • javax.swing.JSlider (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • cytoscape.dialogs.NewSlider.MJSlider (implements javax.swing.event.ChangeListener)
        • javax.swing.JSplitPane (implements javax.accessibility.Accessible)
          • cytoscape.view.cytopanels.BiModalJSplitPane (implements cytoscape.view.cytopanels.CytoPanelContainer)
        • javax.swing.JTable (implements javax.accessibility.Accessible, javax.swing.event.CellEditorListener, javax.swing.event.ListSelectionListener, javax.swing.Scrollable, javax.swing.event.TableColumnModelListener, javax.swing.event.TableModelListener)
          • cytoscape.util.swing.JTreeTable
        • javax.swing.text.JTextComponent (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • javax.swing.JTextField (implements javax.swing.SwingConstants)
            • cytoscape.dialogs.NewSlider.MJTextField (implements java.awt.event.ActionListener)
        • javax.swing.JToolBar (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
          • cytoscape.util.CytoscapeToolBar
        • javax.swing.JTree (implements javax.accessibility.Accessible, javax.swing.Scrollable)
          • cytoscape.util.swing.JTreeTable.TreeTableCellRenderer (implements javax.swing.table.TableCellRenderer)
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Dialog
          • javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • cytoscape.data.annotation.AnnotationGui.Gui
            • cytoscape.data.AttributeSaverDialog
            • cytoscape.dialogs.EdgeAttributesPopupDetails
            • cytoscape.dialogs.ExpressionDataPopupTable
            • cytoscape.dialogs.GinyEdgeControlDialog
            • cytoscape.dialogs.ImportNetworkDialog
            • cytoscape.util.IndeterminateProgressBar
            • cytoscape.dialogs.NetworkMetaDataDialog (implements javax.swing.event.TableModelListener)
            • cytoscape.dialogs.NewStringPopupDialog
            • cytoscape.data.annotation.OntologyMapperDialog
            • cytoscape.dialogs.PopupTextArea
            • cytoscape.dialogs.preferences.PreferencesDialog (implements java.beans.PropertyChangeListener)
            • cytoscape.dialogs.preferences.PreferenceValueDialog
            • cytoscape.dialogs.VisualStyleBuilderDialog
            • cytoscape.visual.ui.VizMapUI (implements cytoscape.CyNetworkListener)
            • cytoscape.visual.ui.VizMapUI.StyleSelector (implements javax.swing.event.ChangeListener)
        • java.awt.Frame (implements java.awt.MenuContainer)
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • cytoscape.view.CytoscapeDesktop (implements java.beans.PropertyChangeListener)
            • cytoscape.util.CytoscapeProgressMonitor (implements java.lang.Runnable)
  • cytoscape.generated.impl.runtime.ContentHandlerAdaptor (implements org.xml.sax.ContentHandler)
  • cytoscape.generated2.impl.runtime.ContentHandlerAdaptor (implements org.xml.sax.ContentHandler)
  • cytoscape.visual.mappings.continuous.ContinuousMappingPoint (implements java.lang.Cloneable)
  • cytoscape.visual.mappings.continuous.ContinuousMappingReader
  • cytoscape.visual.mappings.continuous.ContinuousMappingWriter
  • cytoscape.visual.mappings.continuous.ContinuousRangeCalculator
  • cytoscape.generated2.impl.ContributorTypeImpl (implements cytoscape.generated2.ContributorType, com.sun.xml.bind.JAXBObject, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.ContributorImpl (implements cytoscape.generated2.Contributor, com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • cytoscape.generated2.impl.CoverageTypeImpl (implements cytoscape.generated2.CoverageType, com.sun.xml.bind.JAXBObject, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.CoverageImpl (implements cytoscape.generated2.Coverage, com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • cytoscape.generated2.impl.CreatorTypeImpl (implements cytoscape.generated2.CreatorType, com.sun.xml.bind.JAXBObject, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.CreatorImpl (implements cytoscape.generated2.Creator, com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • cytoscape.util.CreditScreen
  • cytoscape.data.CyAttributesImpl (implements cytoscape.data.CyAttributes)
  • cytoscape.data.readers.CyAttributesReader
  • cytoscape.data.CyAttributesUtils
  • cytoscape.data.writers.CyAttributesWriter
  • cytoscape.CyEdge (implements giny.model.Edge)
  • cytoscape.view.CyHelpBroker
  • cytoscape.CyMain (implements cytoscape.init.CyInitParams)
  • cytoscape.view.CyMenus (implements giny.view.GraphViewChangeListener)
  • cytoscape.CyNetworkAdapter (implements cytoscape.CyNetworkListener)
  • cytoscape.CyNetworkEvent
  • cytoscape.util.CyNetworkNaming
  • cytoscape.data.CyNetworkUtilities
  • cytoscape.CyNode (implements giny.model.Node)
  • cytoscape.CyProject
  • cytoscape.generated.impl.CysessionTypeImpl (implements cytoscape.generated.CysessionType, com.sun.xml.bind.JAXBObject, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
    • cytoscape.generated.impl.CysessionImpl (implements cytoscape.generated.Cysession, com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
  • cytoscape.view.cytopanels.CytoPanelState
  • cytoscape.generated.impl.CytopanelsTypeImpl (implements cytoscape.generated.CytopanelsType, com.sun.xml.bind.JAXBObject, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
    • cytoscape.generated.impl.CytopanelsImpl (implements cytoscape.generated.Cytopanels, com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
  • cytoscape.generated.impl.CytopanelTypeImpl (implements cytoscape.generated.CytopanelType, com.sun.xml.bind.JAXBObject, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
    • cytoscape.generated.impl.CytopanelImpl (implements cytoscape.generated.Cytopanel, com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
  • cytoscape.view.cytopanels.CytoPanelUtil
  • cytoscape.Cytoscape
  • cytoscape.CytoscapeConfig
  • cytoscape.CytoscapeInit
  • cytoscape.CytoscapeModifiedNetworkManager (implements java.beans.PropertyChangeListener)
  • cytoscape.CytoscapeObj
  • cytoscape.plugin.CytoscapePlugin
  • cytoscape.data.readers.CytoscapeSessionReader
  • cytoscape.data.writers.CytoscapeSessionWriter
  • cytoscape.CytoscapeVersion
  • cytoscape.generated2.impl.DateTypeImpl (implements cytoscape.generated2.DateType, com.sun.xml.bind.JAXBObject, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.DateImpl (implements cytoscape.generated2.Date, com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • javax.swing.tree.DefaultMutableTreeNode (implements java.lang.Cloneable, javax.swing.tree.MutableTreeNode, java.io.Serializable)
    • cytoscape.view.NetworkPanel.NetworkTreeNode
  • cytoscape.visual.mappings.continuous.DeletePointListener (implements java.awt.event.ActionListener)
  • cytoscape.generated2.impl.DescriptionTypeImpl (implements cytoscape.generated2.DescriptionType, com.sun.xml.bind.JAXBObject, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.DescriptionImpl (implements cytoscape.generated2.Description, com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • ding.view.DGraphView (implements giny.view.GraphView, java.awt.print.Printable)
    • cytoscape.ding.DingNetworkView (implements cytoscape.view.CyNetworkView)
  • cytoscape.visual.mappings.discrete.DiscreteMappingReader
  • cytoscape.visual.mappings.discrete.DiscreteMappingWriter
  • cytoscape.visual.mappings.discrete.DiscreteRangeCalculator
  • cytoscape.visual.parsers.DoubleParser (implements cytoscape.visual.parsers.ValueParser)
  • cytoscape.visual.EdgeAppearance
  • cytoscape.visual.EdgeAppearanceCalculator (implements java.lang.Cloneable)
  • cytoscape.generated.impl.EdgeTypeImpl (implements cytoscape.generated.EdgeType, com.sun.xml.bind.JAXBObject, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
    • cytoscape.generated.impl.EdgeImpl (implements cytoscape.generated.Edge, com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
  • cytoscape.generated.impl.runtime.ErrorHandlerAdaptor (implements org.xml.sax.ErrorHandler)
  • cytoscape.generated2.impl.runtime.ErrorHandlerAdaptor (implements org.xml.sax.ErrorHandler)
  • cytoscape.util.Exec
  • cytoscape.data.ExpressionData (implements java.io.Serializable)
  • cytoscape.data.attr.util.ExtensibleMultiHashMapModel
  • javax.swing.filechooser.FileFilter
    • cytoscape.util.CyFileFilter (implements java.io.FilenameFilter)
  • cytoscape.util.FileUtil
  • fing.model.FingExtensibleGraphPerspective
    • cytoscape.giny.FingCyNetwork (implements cytoscape.CyNetwork, giny.model.GraphPerspective)
  • fing.model.FingExtensibleRootGraph
    • cytoscape.giny.CytoscapeFingRootGraph (implements cytoscape.giny.CytoscapeRootGraph)
  • cytoscape.view.FlagAndSelectionHandler (implements cytoscape.data.FlagEventListener, giny.view.GraphViewChangeListener)
  • cytoscape.data.FlagEvent
  • cytoscape.data.FlagFilter (implements giny.filter.Filter, giny.model.GraphPerspectiveChangeListener)
  • cytoscape.visual.mappings.FlatInterpolator (implements cytoscape.visual.mappings.Interpolator)
  • cytoscape.data.annotation.FlattenIntVectors
  • java.awt.event.FocusAdapter (implements java.awt.event.FocusListener)
    • cytoscape.visual.mappings.continuous.PointTextListener
  • cytoscape.visual.parsers.FontParser (implements cytoscape.visual.parsers.ValueParser)
  • org.iso_relax.verifier.impl.ForkContentHandler (implements org.xml.sax.ContentHandler)
    • cytoscape.generated.impl.runtime.ValidatingUnmarshaller (implements cytoscape.generated.impl.runtime.SAXUnmarshallerHandler)
    • cytoscape.generated2.impl.runtime.ValidatingUnmarshaller (implements cytoscape.generated2.impl.runtime.SAXUnmarshallerHandler)
  • cytoscape.generated2.impl.FormatTypeImpl (implements cytoscape.generated2.FormatType, com.sun.xml.bind.JAXBObject, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.FormatImpl (implements cytoscape.generated2.Format, com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • cytoscape.data.servers.ui.GeneOntologyWizard
  • cytoscape.dialogs.GeneralColorDialogListener (implements java.awt.event.ActionListener)
  • cytoscape.data.servers.getCanonicalName
  • cytoscape.data.servers.getCommonName
  • cytoscape.actions.GinyUtils
  • cytoscape.visual.GlobalAppearance
  • cytoscape.data.readers.GMLNode (implements java.util.Comparator)
  • cytoscape.data.readers.GMLParser
  • cytoscape.data.readers.GMLReader2 (implements cytoscape.data.readers.GraphReader)
  • cytoscape.data.readers.GMLTree
  • cytoscape.data.readers.GMLWriter
  • cytoscape.generated.impl.runtime.GrammarInfoImpl (implements cytoscape.generated.impl.runtime.GrammarInfo)
  • cytoscape.generated2.impl.runtime.GrammarInfoImpl (implements cytoscape.generated2.impl.runtime.GrammarInfo)
  • cytoscape.foo.GraphConverter
  • cytoscape.foo.GraphConverter2
  • cytoscape.generated2.impl.GraphicsTypeImpl (implements cytoscape.generated2.GraphicsType, com.sun.xml.bind.JAXBObject, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.GraphicsImpl (implements cytoscape.generated2.Graphics, com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • cytoscape.render.stateful.GraphLOD
    • cytoscape.ding.CyGraphLOD (implements java.beans.PropertyChangeListener)
  • cytoscape.data.GraphObjAttributes
  • cytoscape.util.GraphSetUtils
  • cytoscape.view.GraphViewController (implements giny.model.GraphPerspectiveChangeListener)
  • cytoscape.dialogs.GridBagGroup
  • cytoscape.generated.impl.HiddenEdgesTypeImpl (implements cytoscape.generated.HiddenEdgesType, com.sun.xml.bind.JAXBObject, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
    • cytoscape.generated.impl.HiddenEdgesImpl (implements cytoscape.generated.HiddenEdges, com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
  • cytoscape.generated.impl.HiddenNodesTypeImpl (implements cytoscape.generated.HiddenNodesType, com.sun.xml.bind.JAXBObject, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
    • cytoscape.generated.impl.HiddenNodesImpl (implements cytoscape.generated.HiddenNodes, com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
  • cytoscape.generated2.impl.IdentifierTypeImpl (implements cytoscape.generated2.IdentifierType, com.sun.xml.bind.JAXBObject, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.IdentifierImpl (implements cytoscape.generated2.Identifier, com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • cytoscape.dialogs.IntegerEntryField.PositiveIntegerListener (implements java.awt.event.FocusListener)
  • cytoscape.data.Interaction
  • cytoscape.data.readers.InteractionsReader (implements cytoscape.data.readers.GraphReader)
  • cytoscape.generated2.impl.runtime.InterleaveDispatcher (implements cytoscape.generated2.impl.runtime.UnmarshallingEventHandler)
  • cytoscape.visual.mappings.InterpolatorFactory
  • javax.xml.bind.JAXBContext
    • cytoscape.generated.impl.runtime.DefaultJAXBContextImpl
      • cytoscape.generated.ObjectFactory
    • cytoscape.generated2.impl.runtime.DefaultJAXBContextImpl
      • cytoscape.generated2.ObjectFactory
  • cytoscape.generated.impl.JAXBVersion
  • cytoscape.generated2.impl.JAXBVersion
  • cytoscape.dialogs.JointIntegerEntry.CopyField1To2Listener (implements java.awt.event.FocusListener)
  • cytoscape.dialogs.JointIntegerEntry.LockedItemListener (implements java.awt.event.ItemListener)
  • cytoscape.data.readers.KeyValue
  • cytoscape.generated2.impl.LanguageTypeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated2.LanguageType, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.LanguageImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated2.Language, com.sun.xml.bind.RIElement, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • cytoscape.layout.LayoutUtils
  • cytoscape.visual.LineType (implements java.io.Serializable)
  • cytoscape.generated2.impl.LineTypeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated2.LineType, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.LineImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated2.Line, com.sun.xml.bind.RIElement, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • cytoscape.visual.parsers.LineTypeParser (implements cytoscape.visual.parsers.ValueParser)
  • cytoscape.data.servers.loadAnnotation
  • cytoscape.data.servers.loadAnnotationFromFlatFiles
  • cytoscape.data.servers.loadThesaurus
  • cytoscape.util.MacAppConfig
  • cytoscape.visual.ui.MapperAndAttribute
  • cytoscape.visual.mappings.MappingFactory
  • cytoscape.data.readers.MetadataParser
  • cytoscape.util.MinMaxDouble
  • cytoscape.util.MinMaxInt
  • cytoscape.util.Misc
  • cytoscape.visual.ui.MiscDialog
  • cytoscape.dialogs.MiscGB
  • java.awt.event.MouseAdapter (implements java.awt.event.MouseListener)
    • cytoscape.view.NetworkPanel.PopupListener
  • cytoscape.data.mRNAMeasurement (implements java.io.Serializable)
  • cytoscape.generated.impl.runtime.MSVValidator (implements com.sun.msv.grammar.IDContextProvider2, cytoscape.generated.impl.runtime.XMLSerializer)
  • cytoscape.generated2.impl.runtime.MSVValidator (implements com.sun.msv.grammar.IDContextProvider2, cytoscape.generated2.impl.runtime.XMLSerializer)
  • cytoscape.data.attr.util.MultiHashMapFactory
  • cytoscape.data.attr.util.MultiHashMapHelpers
  • cytoscape.util.MutableBool
  • cytoscape.util.MutableColor
  • cytoscape.util.MutableInt
  • cytoscape.util.MutableString
  • cytoscape.generated.impl.runtime.NamespaceContextImpl (implements cytoscape.generated.impl.runtime.NamespaceContext2)
  • cytoscape.generated2.impl.runtime.NamespaceContextImpl (implements cytoscape.generated2.impl.runtime.NamespaceContext2)
  • cytoscape.data.NetworkData
  • cytoscape.generated.impl.NetworkTreeTypeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated.NetworkTreeType, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
    • cytoscape.generated.impl.NetworkTreeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated.NetworkTree, com.sun.xml.bind.RIElement, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
  • cytoscape.generated.impl.NetworkTypeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated.NetworkType, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
    • cytoscape.generated.impl.NetworkImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated.Network, com.sun.xml.bind.RIElement, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
  • cytoscape.view.NetworkViewManager (implements javax.swing.event.ChangeListener, javax.swing.event.InternalFrameListener, java.beans.PropertyChangeListener, java.awt.event.WindowFocusListener)
  • cytoscape.visual.NodeAppearance
  • cytoscape.visual.NodeAppearanceCalculator (implements java.lang.Cloneable)
  • cytoscape.visual.parsers.NodeShapeParser (implements cytoscape.visual.parsers.ValueParser)
  • cytoscape.generated.impl.NodeTypeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated.NodeType, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
    • cytoscape.generated.impl.NodeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated.Node, com.sun.xml.bind.RIElement, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
  • cytoscape.visual.mappings.NumberInterpolator (implements cytoscape.visual.mappings.Interpolator)
    • cytoscape.visual.mappings.LinearNumberInterpolator
      • cytoscape.visual.mappings.LinearNumberToColorInterpolator
      • cytoscape.visual.mappings.LinearNumberToNumberInterpolator
  • cytoscape.visual.parsers.ObjectToString
  • cytoscape.visual.OldStyleCalculatorIO
  • cytoscape.data.annotation.Ontology (implements java.io.Serializable)
  • cytoscape.data.annotation.OntologyDescription (implements java.io.Serializable)
  • cytoscape.data.annotation.readers.OntologyFlatFileReader
  • cytoscape.data.annotation.OntologyTerm (implements java.io.Serializable)
  • cytoscape.data.annotation.readers.OntologyXmlReader
  • cytoscape.util.OpenBrowser
  • cytoscape.generated.impl.PanelStateImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated.PanelState, com.sun.xml.bind.RIElement, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
  • cytoscape.generated.impl.PanelsTypeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated.PanelsType, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
    • cytoscape.generated.impl.PanelsImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated.Panels, com.sun.xml.bind.RIElement, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
  • cytoscape.generated.impl.PanelTypeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated.PanelType, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
    • cytoscape.generated.impl.PanelImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated.Panel, com.sun.xml.bind.RIElement, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
  • cytoscape.generated.impl.ParentTypeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated.ParentType, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
    • cytoscape.generated.impl.ParentImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated.Parent, com.sun.xml.bind.RIElement, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
  • cytoscape.visual.mappings.PassThroughMapping (implements cytoscape.visual.mappings.ObjectMapping)
  • cytoscape.util.PercentUtil
  • cytoscape.dialogs.PhoebeNodeControl
  • cytoscape.dialogs.PhoebeNodeControl.SliderListener (implements javax.swing.event.ChangeListener)
  • cytoscape.generated.impl.PluginsTypeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated.PluginsType, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
    • cytoscape.generated.impl.PluginsImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated.Plugins, com.sun.xml.bind.RIElement, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
  • cytoscape.generated.impl.PluginTypeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated.PluginType, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
    • cytoscape.generated.impl.PluginImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated.Plugin, com.sun.xml.bind.RIElement, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
  • cytoscape.generated2.impl.PointTypeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated2.PointType, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.PointImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated2.Point, com.sun.xml.bind.RIElement, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • cytoscape.visual.ui.PopupIconChooser
  • cytoscape.visual.PropertiesTester
  • cytoscape.generated2.impl.PublisherTypeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated2.PublisherType, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.PublisherImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated2.Publisher, com.sun.xml.bind.RIElement, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • cytoscape.visual.mappings.discrete.RandomColorListener (implements java.awt.event.ActionListener)
  • cytoscape.foo.RandomRenderableSubgraphLogic
  • cytoscape.generated2.impl.RdfDescriptionTypeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated2.RdfDescriptionType, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.RdfDescriptionImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated2.RdfDescription, com.sun.xml.bind.RIElement, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • cytoscape.generated2.impl.RdfRDFTypeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated2.RdfRDFType, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.RdfRDFImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated2.RdfRDF, com.sun.xml.bind.RIElement, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • cytoscape.generated2.impl.RelationTypeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated2.RelationType, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.RelationImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated2.Relation, com.sun.xml.bind.RIElement, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • java.rmi.server.RemoteObject (implements java.rmi.Remote, java.io.Serializable)
    • java.rmi.server.RemoteServer
      • java.rmi.server.UnicastRemoteObject
        • cytoscape.data.servers.BioDataServerRmi (implements cytoscape.data.servers.BioDataServerInterface, java.io.Serializable)
  • cytoscape.generated2.impl.RightsTypeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated2.RightsType, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.RightsImpl (implements com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated2.Rights, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • cytoscape.generated.impl.runtime.SAXMarshaller (implements cytoscape.generated.impl.runtime.XMLSerializer)
  • cytoscape.generated2.impl.runtime.SAXMarshaller (implements cytoscape.generated2.impl.runtime.XMLSerializer)
  • cytoscape.generated.impl.runtime.SAXUnmarshallerHandlerImpl (implements cytoscape.generated.impl.runtime.SAXUnmarshallerHandler, cytoscape.generated.impl.runtime.UnmarshallingContext)
  • cytoscape.generated2.impl.runtime.SAXUnmarshallerHandlerImpl (implements cytoscape.generated2.impl.runtime.SAXUnmarshallerHandler, cytoscape.generated2.impl.runtime.UnmarshallingContext)
  • cytoscape.generated.impl.SelectedEdgesTypeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated.SelectedEdgesType, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
    • cytoscape.generated.impl.SelectedEdgesImpl (implements com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated.SelectedEdges, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
  • cytoscape.generated.impl.SelectedNodesTypeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated.SelectedNodesType, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
    • cytoscape.generated.impl.SelectedNodesImpl (implements com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated.SelectedNodes, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
  • cytoscape.generated.impl.SelectedPanelImpl (implements com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated.SelectedPanel, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
  • cytoscape.data.SelectEvent
  • cytoscape.data.SelectFilter (implements giny.filter.Filter, giny.model.GraphPerspectiveChangeListener)
  • cytoscape.data.Semantics
  • cytoscape.generated.impl.SessionNoteImpl (implements com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated.SessionNote, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
  • cytoscape.generated.impl.SessionStateTypeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated.SessionStateType, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
    • cytoscape.generated.impl.SessionStateImpl (implements com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated.SessionState, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.impl.runtime.XMLSerializable)
  • cytoscape.visual.ShapeNodeRealizer
  • cytoscape.dialogs.ShrinkExpandGraphUI
  • cytoscape.generated2.impl.SimpleEdgeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated2.SimpleEdge, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.GraphicEdgeImpl (implements cytoscape.generated2.GraphicEdge, com.sun.xml.bind.JAXBObject, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
      • cytoscape.generated2.impl.EdgeImpl (implements cytoscape.generated2.Edge, com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • cytoscape.generated2.impl.SimpleGraphImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated2.SimpleGraph, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.GraphicGraphImpl (implements cytoscape.generated2.GraphicGraph, com.sun.xml.bind.JAXBObject, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
      • cytoscape.generated2.impl.GraphImpl (implements cytoscape.generated2.Graph, com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • cytoscape.generated2.impl.SimpleNodeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated2.SimpleNode, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.GraphicNodeImpl (implements cytoscape.generated2.GraphicNode, com.sun.xml.bind.JAXBObject, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
      • cytoscape.generated2.impl.NodeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated2.Node, com.sun.xml.bind.RIElement, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • cytoscape.generated2.impl.SourceTypeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated2.SourceType, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.SourceImpl (implements com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated2.Source, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • cytoscape.data.servers.status
  • cytoscape.visual.parsers.StringParser (implements cytoscape.visual.parsers.ValueParser)
  • cytoscape.visual.SubjectBase
    • cytoscape.visual.mappings.ContinuousMapping (implements cytoscape.visual.mappings.ObjectMapping)
    • cytoscape.visual.mappings.DiscreteMapping (implements cytoscape.visual.mappings.ObjectMapping)
    • cytoscape.visual.GlobalAppearanceCalculator (implements java.lang.Cloneable)
    • cytoscape.visual.VisualMappingManager
  • cytoscape.generated2.impl.SubjectTypeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated2.SubjectType, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.SubjectImpl (implements com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated2.Subject, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • cytoscape.util.SwingWorker
  • cytoscape.data.attr.util.test.TestMultiHashMap
  • cytoscape.data.readers.TextFileReader
  • cytoscape.data.readers.TextHttpReader
  • cytoscape.data.readers.TextJarReader
  • cytoscape.data.synonyms.Thesaurus (implements java.io.Serializable)
  • cytoscape.data.synonyms.readers.ThesaurusFlatFileReader
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • cytoscape.plugin.NotAPluginException
      • java.lang.RuntimeException
        • cytoscape.visual.DuplicateCalculatorNameException
        • cytoscape.data.readers.GMLException
  • cytoscape.generated2.impl.TitleTypeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated2.TitleType, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.TitleImpl (implements com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated2.Title, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • cytoscape.util.Transform
  • cytoscape.generated2.impl.TypeTypeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated2.TypeType, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
    • cytoscape.generated2.impl.TypeImpl (implements com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated2.Type, cytoscape.generated2.impl.runtime.UnmarshallableObject, cytoscape.generated2.impl.runtime.ValidatableObject, cytoscape.generated2.impl.runtime.XMLSerializable)
  • cytoscape.util.UndoManager
  • cytoscape.generated.impl.runtime.UnmarshallingEventHandlerAdaptor (implements cytoscape.generated.impl.runtime.UnmarshallingEventHandler)
  • cytoscape.generated2.impl.runtime.UnmarshallingEventHandlerAdaptor (implements cytoscape.generated2.impl.runtime.UnmarshallingEventHandler)
  • cytoscape.generated.impl.runtime.Util
  • cytoscape.generated2.impl.runtime.Util
  • cytoscape.generated.impl.runtime.ValidatorImpl (implements javax.xml.bind.Validator)
  • cytoscape.generated2.impl.runtime.ValidatorImpl (implements javax.xml.bind.Validator)
  • cytoscape.visual.mappings.discrete.ValueChangeListener (implements java.awt.event.ItemListener)
  • cytoscape.visual.mappings.continuous.ValueListener (implements java.awt.event.ItemListener)
  • cytoscape.generated.impl.ViewableNodesTypeImpl (implements com.sun.xml.bind.JAXBObject, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.ViewableNodesType, cytoscape.generated.impl.runtime.XMLSerializable)
    • cytoscape.generated.impl.ViewableNodesImpl (implements com.sun.xml.bind.JAXBObject, com.sun.xml.bind.RIElement, cytoscape.generated.impl.runtime.UnmarshallableObject, cytoscape.generated.impl.runtime.ValidatableObject, cytoscape.generated.ViewableNodes, cytoscape.generated.impl.runtime.XMLSerializable)
  • cytoscape.visual.VisualStyle (implements java.lang.Cloneable)
  • cytoscape.data.readers.VisualStyleBuilder
  • cytoscape.visual.ui.VizMapAttrTab.CalculatorUIListener (implements javax.swing.event.ChangeListener)
  • cytoscape.visual.ui.VizMapAttrTab.TabContainerListener (implements javax.swing.event.ChangeListener)
  • cytoscape.visual.ui.VizMapUI.StyleSelector.StyleSelectionListener (implements java.awt.event.ItemListener)
  • cytoscape.visual.ui.VizUIUtilities
  • cytoscape.util.shadegrown.WindowUtilities (implements javax.swing.WindowConstants)
  • com.nexes.wizard.WizardPanelDescriptor
    • cytoscape.data.servers.ui.AnotationPanelDescriptor (implements java.awt.event.ActionListener)
    • cytoscape.data.servers.ui.ManifestFileSelectionPanelDescriptor (implements java.awt.event.ActionListener)
    • cytoscape.data.servers.ui.OboPanelDescriptor (implements java.awt.event.ActionListener)
    • cytoscape.data.servers.ui.SelectFormatPanelDescriptor
    • cytoscape.data.servers.ui.SpeciesPanelDescriptor
  • cytoscape.data.readers.XGMMLReader (implements cytoscape.data.readers.GraphReader)
  • cytoscape.data.writers.XGMMLWriter
  • cytoscape.util.ZipMultipleFiles

Interface Hierarchy

• cytoscape.generated2.AnyType
  • cytoscape.generated2.Dcmes (also extends javax.xml.bind.Element)
• cytoscape.generated2.AttType
  • cytoscape.generated2.Att (also extends javax.xml.bind.Element)
• cytoscape.generated2.CenterType
  • cytoscape.generated2.Center (also extends javax.xml.bind.Element)
• cytoscape.generated.ChildType
  • cytoscape.generated.Child (also extends javax.xml.bind.Element)
• java.lang.Cloneable
  • cytoscape.visual.calculators.Calculator
    • cytoscape.visual.calculators.EdgeArrowCalculator
    • cytoscape.visual.calculators.EdgeColorCalculator
    • cytoscape.visual.calculators.EdgeFontFaceCalculator
    • cytoscape.visual.calculators.EdgeFontSizeCalculator
    • cytoscape.visual.calculators.EdgeLabelCalculator
    • cytoscape.visual.calculators.EdgeLineTypeCalculator
    • cytoscape.visual.calculators.EdgeToolTipCalculator
    • cytoscape.visual.calculators.NodeColorCalculator
    • cytoscape.visual.calculators.NodeFontFaceCalculator
    • cytoscape.visual.calculators.NodeFontSizeCalculator
    • cytoscape.visual.calculators.NodeLabelCalculator
    • cytoscape.visual.calculators.NodeLabelColorCalculator
    • cytoscape.visual.calculators.NodeLineTypeCalculator
    • cytoscape.visual.calculators.NodeShapeCalculator
    • cytoscape.visual.calculators.NodeSizeCalculator
    • cytoscape.visual.calculators.NodeToolTipCalculator
  • cytoscape.visual.mappings.ObjectMapping
• org.xml.sax.ContentHandler
  • javax.xml.bind.UnmarshallerHandler
    • cytoscape.generated.impl.runtime.SAXUnmarshallerHandler
    • cytoscape.generated2.impl.runtime.SAXUnmarshallerHandler
• cytoscape.generated2.ContributorType
  • cytoscape.generated2.Contributor (also extends javax.xml.bind.Element)
• cytoscape.generated2.CoverageType
  • cytoscape.generated2.Coverage (also extends javax.xml.bind.Element)
• cytoscape.generated2.CreatorType
  • cytoscape.generated2.Creator (also extends javax.xml.bind.Element)
• cytoscape.data.CyAttributes
• cytoscape.init.CyInitParams
• cytoscape.CyNetworkData
• cytoscape.CyNetworkListener
• cytoscape.generated.CysessionType
  • cytoscape.generated.Cysession (also extends javax.xml.bind.Element)
• cytoscape.view.cytopanels.CytoPanel
• cytoscape.view.cytopanels.CytoPanelContainer
• cytoscape.generated.CytopanelsType
  • cytoscape.generated.Cytopanels (also extends javax.xml.bind.Element)
• cytoscape.generated.CytopanelType
  • cytoscape.generated.Cytopanel (also extends javax.xml.bind.Element)
• cytoscape.generated2.DateType
  • cytoscape.generated2.Date (also extends javax.xml.bind.Element)
• cytoscape.generated2.DescriptionType
  • cytoscape.generated2.Description (also extends javax.xml.bind.Element)
• cytoscape.generated.EdgeType
  • cytoscape.generated.Edge (also extends javax.xml.bind.Element)
• giny.view.EdgeView
  • cytoscape.view.CyEdgeView
• javax.xml.bind.Element
  • cytoscape.generated2.Att (also extends cytoscape.generated2.AttType)
  • cytoscape.generated2.Center (also extends cytoscape.generated2.CenterType)
  • cytoscape.generated.Child (also extends cytoscape.generated.ChildType)
  • cytoscape.generated2.Contributor (also extends cytoscape.generated2.ContributorType)
  • cytoscape.generated2.Coverage (also extends cytoscape.generated2.CoverageType)
  • cytoscape.generated2.Creator (also extends cytoscape.generated2.CreatorType)
  • cytoscape.generated.Cysession (also extends cytoscape.generated.CysessionType)
  • cytoscape.generated.Cytopanel (also extends cytoscape.generated.CytopanelType)
  • cytoscape.generated.Cytopanels (also extends cytoscape.generated.CytopanelsType)
  • cytoscape.generated2.Date (also extends cytoscape.generated2.DateType)
  • cytoscape.generated2.Dcmes (also extends cytoscape.generated2.AnyType)
  • cytoscape.generated2.Description (also extends cytoscape.generated2.DescriptionType)
  • cytoscape.generated.Edge (also extends cytoscape.generated.EdgeType)
  • cytoscape.generated2.Edge (also extends cytoscape.generated2.GraphicEdge)
  • cytoscape.generated2.Format (also extends cytoscape.generated2.FormatType)
  • cytoscape.generated2.Graph (also extends cytoscape.generated2.GraphicGraph)
  • cytoscape.generated2.Graphics (also extends cytoscape.generated2.GraphicsType)
  • cytoscape.generated.HiddenEdges (also extends cytoscape.generated.HiddenEdgesType)
  • cytoscape.generated.HiddenNodes (also extends cytoscape.generated.HiddenNodesType)
  • cytoscape.generated2.Identifier (also extends cytoscape.generated2.IdentifierType)
  • cytoscape.generated2.Language (also extends cytoscape.generated2.LanguageType)
  • cytoscape.generated2.Line (also extends cytoscape.generated2.LineType)
  • cytoscape.generated.Network (also extends cytoscape.generated.NetworkType)
  • cytoscape.generated.NetworkTree (also extends cytoscape.generated.NetworkTreeType)
  • cytoscape.generated.Node (also extends cytoscape.generated.NodeType)
  • cytoscape.generated2.Node (also extends cytoscape.generated2.GraphicNode)
  • cytoscape.generated.Panel (also extends cytoscape.generated.PanelType)
  • cytoscape.generated.Panels (also extends cytoscape.generated.PanelsType)
  • cytoscape.generated.PanelState
  • cytoscape.generated.Parent (also extends cytoscape.generated.ParentType)
  • cytoscape.generated.Plugin (also extends cytoscape.generated.PluginType)
  • cytoscape.generated.Plugins (also extends cytoscape.generated.PluginsType)
  • cytoscape.generated2.Point (also extends cytoscape.generated2.PointType)
  • cytoscape.generated2.Publisher (also extends cytoscape.generated2.PublisherType)
  • cytoscape.generated2.RdfDescription (also extends cytoscape.generated2.RdfDescriptionType)
  • cytoscape.generated2.RdfRDF (also extends cytoscape.generated2.RdfRDFType)
  • cytoscape.generated2.Relation (also extends cytoscape.generated2.RelationType)
  • cytoscape.generated2.Rights (also extends cytoscape.generated2.RightsType)
  • cytoscape.generated.SelectedEdges (also extends cytoscape.generated.SelectedEdgesType)
  • cytoscape.generated.SelectedNodes (also extends cytoscape.generated.SelectedNodesType)
  • cytoscape.generated.SelectedPanel
  • cytoscape.generated.SessionNote
  • cytoscape.generated.SessionState (also extends cytoscape.generated.SessionStateType)
  • cytoscape.generated2.Source (also extends cytoscape.generated2.SourceType)
  • cytoscape.generated2.Subject (also extends cytoscape.generated2.SubjectType)
  • cytoscape.generated2.Title (also extends cytoscape.generated2.TitleType)
  • cytoscape.generated2.Type (also extends cytoscape.generated2.TypeType)
  • cytoscape.generated.ViewableNodes (also extends cytoscape.generated.ViewableNodesType)
• java.util.EventListener
  • cytoscape.view.cytopanels.CytoPanelListener
• cytoscape.data.FlagEventListener
• cytoscape.generated2.FormatType
  • cytoscape.generated2.Format (also extends javax.xml.bind.Element)
• cytoscape.generated.impl.runtime.GrammarInfo
• cytoscape.generated2.impl.runtime.GrammarInfo
• cytoscape.generated2.GraphicsType
  • cytoscape.generated2.Graphics (also extends javax.xml.bind.Element)
• giny.model.GraphPerspective
  • cytoscape.CyNetwork
• cytoscape.data.readers.GraphReader
• giny.view.GraphView
  • cytoscape.view.CyNetworkView
• cytoscape.view.GraphViewHandler
• cytoscape.generated.HiddenEdgesType
  • cytoscape.generated.HiddenEdges (also extends javax.xml.bind.Element)
• cytoscape.generated.HiddenNodesType
  • cytoscape.generated.HiddenNodes (also extends javax.xml.bind.Element)
• cytoscape.generated2.IdentifierType
  • cytoscape.generated2.Identifier (also extends javax.xml.bind.Element)
• cytoscape.visual.mappings.Interpolator
• java.util.Iterator
  • cytoscape.data.attr.CountedIterator
• com.sun.xml.bind.JAXBObject
  • cytoscape.generated.impl.runtime.XMLSerializable
    • cytoscape.generated.impl.runtime.ValidatableObject
  • cytoscape.generated2.impl.runtime.XMLSerializable
    • cytoscape.generated2.impl.runtime.ValidatableObject
• cytoscape.generated2.LanguageType
  • cytoscape.generated2.Language (also extends javax.xml.bind.Element)
• cytoscape.generated2.LineType
  • cytoscape.generated2.Line (also extends javax.xml.bind.Element)
• cytoscape.util.MonitoredTask
  • cytoscape.layout.LayoutAlgorithm
• cytoscape.data.attr.MultiHashMap
• cytoscape.data.attr.MultiHashMapDefinition
• cytoscape.data.attr.MultiHashMapDefinitionListener
• cytoscape.data.attr.MultiHashMapListener
• javax.xml.namespace.NamespaceContext
  • cytoscape.generated.impl.runtime.NamespaceContext2
  • cytoscape.generated2.impl.runtime.NamespaceContext2
  • cytoscape.generated.impl.runtime.UnmarshallingContext
  • cytoscape.generated2.impl.runtime.UnmarshallingContext
• cytoscape.generated.NetworkTreeType
  • cytoscape.generated.NetworkTree (also extends javax.xml.bind.Element)
• cytoscape.generated.NetworkType
  • cytoscape.generated.Network (also extends javax.xml.bind.Element)
• cytoscape.view.NetworkView
• cytoscape.generated.NodeType
  • cytoscape.generated.Node (also extends javax.xml.bind.Element)
• giny.view.NodeView
  • cytoscape.view.CyNodeView
• cytoscape.generated.PanelsType
  • cytoscape.generated.Panels (also extends javax.xml.bind.Element)
• cytoscape.generated.PanelType
  • cytoscape.generated.Panel (also extends javax.xml.bind.Element)
• cytoscape.generated.ParentType
  • cytoscape.generated.Parent (also extends javax.xml.bind.Element)
• cytoscape.generated.PluginsType
  • cytoscape.generated.Plugins (also extends javax.xml.bind.Element)
• cytoscape.generated.PluginType
  • cytoscape.generated.Plugin (also extends javax.xml.bind.Element)
• cytoscape.generated2.PointType
  • cytoscape.generated2.Point (also extends javax.xml.bind.Element)
• cytoscape.generated.impl.runtime.PrefixCallback
• cytoscape.generated2.impl.runtime.PrefixCallback
• cytoscape.generated2.PublisherType
  • cytoscape.generated2.Publisher (also extends javax.xml.bind.Element)
• cytoscape.generated2.RdfDescriptionType
  • cytoscape.generated2.RdfDescription (also extends javax.xml.bind.Element)
• cytoscape.generated2.RdfRDFType
  • cytoscape.generated2.RdfRDF (also extends javax.xml.bind.Element)
• cytoscape.generated2.RelationType
  • cytoscape.generated2.Relation (also extends javax.xml.bind.Element)
• java.rmi.Remote
  • cytoscape.data.servers.BioDataServerInterface
• cytoscape.generated2.RightsType
  • cytoscape.generated2.Rights (also extends javax.xml.bind.Element)
• giny.model.RootGraph
  • cytoscape.giny.CytoscapeRootGraph
• cytoscape.generated.SelectedEdgesType
  • cytoscape.generated.SelectedEdges (also extends javax.xml.bind.Element)
• cytoscape.generated.SelectedNodesType
  • cytoscape.generated.SelectedNodes (also extends javax.xml.bind.Element)
• cytoscape.data.SelectEventListener
• cytoscape.generated.SessionStateType
  • cytoscape.generated.SessionState (also extends javax.xml.bind.Element)
• cytoscape.generated2.SimpleEdge
  • cytoscape.generated2.Edge (also extends javax.xml.bind.Element, cytoscape.generated2.GraphicEdge)
  • cytoscape.generated2.GraphicEdge
    • cytoscape.generated2.Edge (also extends javax.xml.bind.Element)
• cytoscape.generated2.SimpleGraph
  • cytoscape.generated2.Graph (also extends javax.xml.bind.Element, cytoscape.generated2.GraphicGraph)
  • cytoscape.generated2.GraphicGraph
    • cytoscape.generated2.Graph (also extends javax.xml.bind.Element)
• cytoscape.generated2.SimpleNode
  • cytoscape.generated2.GraphicNode
    • cytoscape.generated2.Node (also extends javax.xml.bind.Element)
  • cytoscape.generated2.Node (also extends javax.xml.bind.Element, cytoscape.generated2.GraphicNode)
• cytoscape.generated2.SourceType
  • cytoscape.generated2.Source (also extends javax.xml.bind.Element)
• cytoscape.generated2.SubjectType
  • cytoscape.generated2.Subject (also extends javax.xml.bind.Element)
• cytoscape.generated2.TitleType
  • cytoscape.generated2.Title (also extends javax.xml.bind.Element)
• javax.swing.tree.TreeModel
  • cytoscape.util.swing.TreeTableModel
• cytoscape.generated2.TypeType
  • cytoscape.generated2.Type (also extends javax.xml.bind.Element)
• cytoscape.generated.impl.runtime.UnmarshallableObject
• cytoscape.generated2.impl.runtime.UnmarshallableObject
• cytoscape.generated.impl.runtime.UnmarshallingEventHandler
• cytoscape.generated2.impl.runtime.UnmarshallingEventHandler
• cytoscape.visual.parsers.ValueParser
• cytoscape.generated.ViewableNodesType
  • cytoscape.generated.ViewableNodes (also extends javax.xml.bind.Element)
• cytoscape.generated.impl.runtime.XMLSerializer
• cytoscape.generated2.impl.runtime.XMLSerializer