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Cytoscape 2.4.1 (c) 2006,2007 ISB, MSKCC, UCSD
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Constant Field Values

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cytoscape.*

cytoscape.CyNetworkEvent
public static final int BEGIN 0
public static final int END 1
public static final int GRAPH_REPLACED 10
public static final int UNKNOWN -1

cytoscape.Cytoscape
public static final String NETWORK_LOADED "NETWORK_LOADED"
public static final String NETWORK_MODIFIED "NETWORK_MODIFIED"
public static final String NETWORK_SAVED "NETWORK_SAVED"
public static final String ONTOLOGY_ROOT "ONTOLOGY_ROOT"
public static final String PREFERENCE_MODIFIED "PREFERENCE_MODIFIED"
public static final String PREFERENCES_UPDATED "PREFERENCES_UPDATED"
public static final String READER_CLIENT_KEY "reader_client_key"
public static final String RESTORE_PLUGIN_STATE "RESTORE_PLUGIN_STATE"
public static final String SAVE_PLUGIN_STATE "SAVE_PLUGIN_STATE"
public static final int SELECT_EDGES_ONLY 2
public static final int SELECT_NODES_AND_EDGES 3
public static final int SELECT_NODES_ONLY 1
public static final int SESSION_CHANGED 2
public static final int SESSION_CLOSED 3
public static final int SESSION_NEW 0
public static final int SESSION_OPENED 1

cytoscape.CytoscapeModifiedNetworkManager
public static final String CLEAN "Clean"
public static final String MODIFIED "Modified"

cytoscape.actions.*

cytoscape.actions.ExportAction
public static final String MENU_LABEL "Export As..."

cytoscape.actions.ExportAsGraphicsAction
public static final String MENU_LABEL "Network As Graphics"

cytoscape.actions.OpenSessionAction
public static final String SESSION_EXT "cys"

cytoscape.actions.PrintAction
public static final String MENU_LABEL "Print..."

cytoscape.actions.SaveSessionAction
public static final String SESSION_EXT ".cys"

cytoscape.data.*

cytoscape.data.AttributeSaverDialog
public static final int EDGES 1
public static final int NODES 0

cytoscape.data.CyAttributes
public static final byte TYPE_BOOLEAN 1
public static final byte TYPE_COMPLEX -4
public static final byte TYPE_FLOATING 2
public static final byte TYPE_INTEGER 3
public static final byte TYPE_SIMPLE_LIST -2
public static final byte TYPE_SIMPLE_MAP -3
public static final byte TYPE_STRING 4
public static final byte TYPE_UNDEFINED -1

cytoscape.data.ExpressionData
public static final int LAMBDA 1
public static final int MAX_LINE_SIZE 8192
public static final int NONE 2
public static final int PVAL 0
public static final int UNKNOWN 3

cytoscape.data.FlagEvent
public static final int EDGE_SET 3
public static final int NODE_SET 2
public static final int SINGLE_EDGE 1
public static final int SINGLE_NODE 0

cytoscape.data.SelectEvent
public static final int EDGE_SET 3
public static final int NODE_SET 2
public static final int SINGLE_EDGE 1
public static final int SINGLE_NODE 0

cytoscape.data.Semantics
public static final String ALIASES "aliases"
public static final String BIOLOGICAL_PROCESS "biological_process"
public static final String CANONICAL_NAME "canonicalName"
public static final String CELLULAR_COMPONENT "cellular_component"
public static final String COMMON_NAME "commonName"
public static final String DNA "DNA"
public static final String GO_ALIASES "GO Aliases"
public static final String GO_COMMON_NAME "GO Common Name"
public static final String IDENTIFIER "identifier"
public static final String INTERACTION "interaction"
public static final String LABEL "label"
public static final String MOLECULAR_FUNCTION "molecular_function"
public static final String MOLECULE_TYPE "molecule_type"
public static final String PROTEIN "protein"
public static final String RNA "RNA"
public static final String SPECIES "species"

cytoscape.data.annotation.OntologyMapperDialog
public static final String GO_BIOLOGICAL_PROCESS "GO Biological Process"
public static final String GO_CELLULAR_COMPONENT "GO Cellular Component"
public static final String GO_MOLECULAR_FUNCTION "GO Molecular Function"

cytoscape.data.attr.MultiHashMapDefinition
public static final byte TYPE_BOOLEAN 1
public static final byte TYPE_FLOATING_POINT 2
public static final byte TYPE_INTEGER 3
public static final byte TYPE_STRING 4

cytoscape.data.ontology.Ontology
public static final String IS_ONTOLOGY "Is_Ontology"

cytoscape.data.ontology.readers.OBOFlatFileReader
public static final String OBO_PREFIX "ontology"
public static final String ONTOLOGY_DAG_ROOT "Ontology DAGs"

cytoscape.data.readers.CytoscapeSessionReader
public static final String BOOKMARK_PACKAGE_NAME "cytoscape.bookmarks"
public static final String CY_PROPS "cytoscape.props"
public static final String CYSESSION "cysession.xml"
public static final String PACKAGE_NAME "cytoscape.generated"
public static final String VIZMAP_PROPS "vizmap.props"
public static final String XGMML_EXT ".xgmml"

cytoscape.data.readers.MetadataParser
public static final String DEFAULT_NETWORK_METADATA_LABEL "Network Metadata"

cytoscape.data.servers.ui.AnotationPanelDescriptor
public static final String IDENTIFIER "ANNOTATION_CHOOSE_PANEL"

cytoscape.data.servers.ui.ManifestFileSelectionPanelDescriptor
public static final String IDENTIFIER "SELECT_OLDFILE_PANEL"

cytoscape.data.servers.ui.OboPanelDescriptor
public static final String IDENTIFIER "OBO_PANEL"

cytoscape.data.servers.ui.SelectFormatPanelDescriptor
public static final String IDENTIFIER "INTRODUCTION_PANEL"

cytoscape.data.servers.ui.SpeciesPanelDescriptor
public static final String IDENTIFIER "SPECIES_PANEL"

cytoscape.data.synonyms.Aliases
public static final String ALIAS "alias"

cytoscape.data.writers.CytoscapeSessionWriter
public static final int EDGE 2
public static final int NODE 1

cytoscape.data.writers.XGMMLWriter
public static final String BACKGROUND "backgroundColor"
public static final String GRAPH_VIEW_CENTER_X "GRAPH_VIEW_CENTER_X"
public static final String GRAPH_VIEW_CENTER_Y "GRAPH_VIEW_CENTER_Y"
public static final String GRAPH_VIEW_ZOOM "GRAPH_VIEW_ZOOM"

cytoscape.init.*

cytoscape.init.CyInitParams
public static final int EMBEDDED_WINDOW 4
public static final int ERROR 0
public static final int GUI 1
public static final int LIBRARY 3
public static final int TEXT 2

cytoscape.util.*

cytoscape.util.CytoscapeMenuBar
public static final String DEFAULT_MENU_SPECIFIER "Tools"

cytoscape.util.CytoscapeProgressMonitor
public static final int ONE_SECOND 1000

cytoscape.util.FileUtil
public static final String urlPattern "^(jar\\:)?(\\w+\\:\\/+\\S+)(\\!\\/\\S*)?$"

cytoscape.util.ZipUtil
public static final int DEF_COMPRESSION_LEVEL 1

cytoscape.view.*

cytoscape.view.CytoscapeDesktop
public static final int EXTERNAL_VIEW 2
public static final int INTERNAL_VIEW 1
public static final String NETWORK_VIEW_CREATED "NETWORK_VIEW_CREATED"
public static final String NETWORK_VIEW_DESTROYED "NETWORK_VIEW_DESTROYED"
public static final String NETWORK_VIEW_FOCUS "NETWORK_VIEW_FOCUS"
public static final String NETWORK_VIEW_FOCUSED "NETWORK_VIEW_FOCUSED"
public static final int TABBED_VIEW 0
public static final String VISUAL_STYLE "VISUAL_STYLE"
public static final String VIZMAP_ENABLED "VIZMAP_ENABLED"

cytoscape.view.cytopanels.BiModalJSplitPane
public static final int MODE_HIDE_SPLIT 2
public static final String MODE_PROPERTY "MODE_PROPERTY"
public static final int MODE_SHOW_SPLIT 1

cytoscape.visual.*

cytoscape.visual.CalculatorIO
public static final String dirHeader "cytoscape.visual.calculators."
public static final String edgeArrowBaseKey "edgeArrowCalculator"
public static final String edgeArrowClassName "EdgeArrowCalculator"
public static final String edgeColorBaseKey "edgeColorCalculator"
public static final String edgeColorClassName "EdgeColorCalculator"
public static final String edgeFontFaceBaseKey "edgeFontFaceCalculator"
public static final String edgeFontFaceClassName "EdgeFontFaceCalculator"
public static final String edgeFontSizeBaseKey "edgeFontSizeCalculator"
public static final String edgeFontSizeClassName "EdgeFontSizeCalculator"
public static final String edgeLabelBaseKey "edgeLabelCalculator"
public static final String edgeLabelClassName "EdgeLabelCalculator"
public static final String edgeLineTypeBaseKey "edgeLineTypeCalculator"
public static final String edgeLineTypeClassName "EdgeLineTypeCalculator"
public static final String edgeToolTipBaseKey "edgeToolTipCalculator"
public static final String edgeToolTipClassName "EdgeToolTipCalculator"
public static final String nodeColorBaseKey "nodeColorCalculator"
public static final String nodeColorClassName "NodeColorCalculator"
public static final String nodeFontFaceBaseKey "nodeFontFaceCalculator"
public static final String nodeFontFaceClassName "NodeFontFaceCalculator"
public static final String nodeFontSizeBaseKey "nodeFontSizeCalculator"
public static final String nodeFontSizeClassName "NodeFontSizeCalculator"
public static final String nodeLabelBaseKey "nodeLabelCalculator"
public static final String nodeLabelClassName "NodeLabelCalculator"
public static final String nodeLineTypeBaseKey "nodeLineTypeCalculator"
public static final String nodeLineTypeClassName "NodeLineTypeCalculator"
public static final String nodeShapeBaseKey "nodeShapeCalculator"
public static final String nodeShapeClassName "NodeShapeCalculator"
public static final String nodeSizeBaseKey "nodeSizeCalculator"
public static final String nodeSizeClassName "NodeSizeCalculator"
public static final String nodeToolTipBaseKey "nodeToolTipCalculator"
public static final String nodeToolTipClassName "NodeToolTipCalculator"

cytoscape.visual.LabelPosition
public static final String centerName "Center"
public static final String eastName "East"
public static final String justifyCenterName "Center Justified"
public static final String justifyLeftName "Left Justified"
public static final String justifyRightName "Right Justified"
public static final String noName "none"
public static final String northEastName "Northeast"
public static final String northName "North"
public static final String northWestName "Northwest"
public static final String southEastName "Southeast"
public static final String southName "South"
public static final String southWestName "Southwest"
public static final String westName "West"

cytoscape.visual.NodeAppearanceCalculator
public static final String nodeBorderColorBypass "node.borderColor"
public static final String nodeFillColorBypass "node.fillColor"
public static final String nodeFontBypass "node.font"
public static final String nodeHeightBypass "node.height"
public static final String nodeLabelBypass "node.label"
public static final String nodeLabelColorBypass "node.labelColor"
public static final String nodeLineTypeBypass "node.lineType"
public static final String nodeShapeBypass "node.shape"
public static final String nodeToolTipBypass "node.toolTip"
public static final String nodeWidthBypass "node.width"

cytoscape.visual.ShapeNodeRealizer
public static final byte DIAMOND 7
public static final byte ELLIPSE 8
public static final byte HEXAGON 9
public static final byte OCTAGON 10
public static final byte PARALLELOGRAM 6
public static final byte RECT 0
public static final byte RECT_3D 2
public static final byte ROUND_RECT 1
public static final byte TRAPEZOID 3
public static final byte TRAPEZOID_2 4
public static final byte TRIANGLE 5

cytoscape.visual.calculators.AbstractCalculator
public static final String ID "ID"

cytoscape.visual.mappings.ObjectMapping
public static final byte EDGE_MAPPING 0
public static final byte NODE_MAPPING 1

cytoscape.visual.mappings.continuous.ContinuousUI
public static final int EQUAL 1
public static final int GREATER 2
public static final int LESSER 0

cytoscape.visual.ui.ValueDisplayer
public static final byte ARROW 2
public static final byte COLOR 0
public static final byte DOUBLE 4
public static final byte FONT 7
public static final byte INT 6
public static final byte LABEL_POSITION 8
public static final byte LINETYPE 1
public static final byte NODESHAPE 5
public static final byte STRING 3

cytoscape.visual.ui.VizMapUI
public static final byte EDGE_COLOR 8
public static final byte EDGE_FONT_FACE 124
public static final byte EDGE_FONT_SIZE 125
public static final byte EDGE_LABEL 12
public static final byte EDGE_LABEL_COLOR 18
public static final byte EDGE_LABEL_FONT 13
public static final byte EDGE_LABEL_POSITION 17
public static final byte EDGE_LINETYPE 9
public static final byte EDGE_SRCARROW 10
public static final byte EDGE_TGTARROW 11
public static final byte EDGE_TOOLTIP 15
public static final byte NODE_BORDER_COLOR 1
public static final byte NODE_COLOR 0
public static final byte NODE_FONT_FACE 122
public static final byte NODE_FONT_SIZE 123
public static final byte NODE_HEIGHT 126
public static final byte NODE_LABEL 5
public static final byte NODE_LABEL_COLOR 7
public static final byte NODE_LABEL_FONT 6
public static final byte NODE_LABEL_POSITION 16
public static final byte NODE_LINETYPE 2
public static final byte NODE_SHAPE 3
public static final byte NODE_SIZE 4
public static final byte NODE_TOOLTIP 14
public static final byte NODE_WIDTH 127

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