cytoscape.data.readers
Class MetadataParser

java.lang.Object
  cytoscape.data.readers.MetadataParser

public class MetadataParser
extends Object

Manipulates network metadata for loading and saving.

Author:

kono

Field Summary

static String

DEFAULT_NETWORK_METADATA_LABEL

Constructor Summary

MetadataParser(CyNetwork network)
Constructor.

MetadataParser(CyNetwork network, String metadataLabel)
Constructor.

Method Summary

cytoscape.generated2.RdfRDF	getMetadata() Get metadata as an RDF object
Map	getMetadataMap() Get Network Metadata as Map object
Map<String,String>	makeNewMetadataMap() Build new metadata RDF structure based on given network information.
void	setMetadata(MetadataEntries entryName, String value)
void	setMetadata(cytoscape.generated2.RdfRDF newMetadata) Set Network Attribute called "Network Metadata" as a Map by using given JAXB object.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

DEFAULT_NETWORK_METADATA_LABEL

public static final String DEFAULT_NETWORK_METADATA_LABEL

See Also:

Constant Field Values

Constructor Detail

MetadataParser

public MetadataParser(CyNetwork network)

Constructor.

Parameters:

network - Target network for editing metadata.

MetadataParser

public MetadataParser(CyNetwork network,
                      String metadataLabel)

Constructor.

Parameters:

network - Target network

metadataLabel - Label used as a tag for this attribute.

Method Detail

makeNewMetadataMap

public Map<String,String> makeNewMetadataMap()

Build new metadata RDF structure based on given network information. Data items in "defaultLabels" will be created and inserted into RDF structure.

getMetadata

public cytoscape.generated2.RdfRDF getMetadata()
                                        throws javax.xml.bind.JAXBException

Get metadata as an RDF object

Returns:

Network metadata in RdfRDF object

Throws:

javax.xml.bind.JAXBException

getMetadataMap

public Map getMetadataMap()

Get Network Metadata as Map object

Returns:

Throws:

URISyntaxException

setMetadata

public void setMetadata(MetadataEntries entryName,
                        String value)

setMetadata

public void setMetadata(cytoscape.generated2.RdfRDF newMetadata)

Set Network Attribute called "Network Metadata" as a Map by using given JAXB object.

Parameters:

newMetadata -