cytoscape.data.ontology
Class DBReference

java.lang.Object
  cytoscape.data.ontology.DBReference

public class DBReference
extends Object

Represents an entry in the database cross reference.

Author:

kono

Constructor Summary

DBReference(String abbreviation, String name, String genericUrl)

DBReference(String abbreviation, String name, String urlSyntax, String genericUrl, String object)

Method Summary

String	getAbbreviation()
String	getFullName()
URL	getGenericURL()
String	getObject()
URL	getQueryURL(String entry)
List<String>	getSynonyms()
void	setSynonym(List<String> synonym)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DBReference

public DBReference(String abbreviation,
                   String name,
                   String genericUrl)

DBReference

public DBReference(String abbreviation,
                   String name,
                   String urlSyntax,
                   String genericUrl,
                   String object)

Method Detail

getAbbreviation

public String getAbbreviation()

getFullName

public String getFullName()

getGenericURL

public URL getGenericURL()
                  throws MalformedURLException

Throws:

MalformedURLException

getObject

public String getObject()

getSynonyms

public List<String> getSynonyms()

getQueryURL

public URL getQueryURL(String entry)
                throws MalformedURLException

Throws:

MalformedURLException

setSynonym

public void setSynonym(List<String> synonym)