Uses of Interface
cytoscape.data.CyAttributes

Packages that use CyAttributes

cytoscape	Core Cytoscape Classes.
cytoscape.data	Basic data classes used by Cytoscape.
cytoscape.data.ontology.readers
cytoscape.data.readers	Reader classes for the basic data types in cytoscape.data.
cytoscape.data.writers
cytoscape.dialogs	UI classes for performing some action, generally more complicated than those contained in the cytoscape.actions package.
cytoscape.visual.calculators	Objects that calculate from the data attributes the value for one visual attribute, such as color, shape, or size.
cytoscape.visual.ui	Top-level UI components for the cytoscape.visual package.
cytoscape.visual.ui.editors.continuous

Uses of CyAttributes in cytoscape

Methods in cytoscape that return CyAttributes

static CyAttributes	Cytoscape.getEdgeAttributes() Gets Global Edge Attributes
static CyAttributes	Cytoscape.getNetworkAttributes() Gets Global Network Attributes.
static CyAttributes	Cytoscape.getNodeAttributes() Gets Global Node Attributes.
static CyAttributes	Cytoscape.getOntologyAttributes() Gets Global Network Attributes.

Uses of CyAttributes in cytoscape.data

Classes in cytoscape.data that implement CyAttributes

class

CyAttributesImpl

Methods in cytoscape.data with parameters of type CyAttributes

static boolean	CyAttributesUtils.copyAttribute(CyAttributes attribs, String sourceId, String targetId, String attribName, boolean copyEquation, StringBuilder errorMessage)
static void	CyAttributesUtils.copyAttribute(String originalID, String copyID, String attrName, CyAttributes attrs, boolean purge) Copy a specific attribute of a given object to another object.
static void	CyAttributesUtils.copyAttributes(String originalID, String copyID, CyAttributes attrs, AttributeFilter filter, boolean purge) Copy all the attributes of a given object that pass a given filter to another object.
static void	CyAttributesUtils.copyAttributes(String originalID, String copyID, CyAttributes attrs, boolean purge) Copy all the attributes of a given object to another object.
void	ExpressionData.copyToAttribs(CyAttributes nodeAttribs, TaskMonitor taskMonitor) Copies ExpressionData data structure into CyAttributes data structure.
static Map	CyAttributesUtils.getAttribute(String attributeName, CyAttributes attrs) DOCUMENT ME!
static List<String>	CyAttributesUtils.getAttributeNamesForObj(String objID, CyAttributes attrs) Return a non-null List of all the attribute names associated with a given identifier for a given CyAttributes.
static Map<String,Object>	CyAttributesUtils.getAttributes(String canonicalName, CyAttributes attrs) DOCUMENT ME!
static Class	CyAttributesUtils.getClass(String attributeName, CyAttributes attrs) DOCUMENT ME!
static List<String>	CyAttributesUtils.getVisibleAttributeNames(CyAttributes attrs) DOCUMENT ME!
boolean	AttributeFilter.includeAttribute(CyAttributes attrs, String objID, String attrName) Return true iff a given attribute should be included in some operation, such as CyAttributesUtils.copyAttributes().
static void	CyAttributesUtils.traverseAttributeValues(String objToTraverseID, String attrName, CyAttributes attrs, AttributeValueVisitor visitor) Traverse all the values of a given attribute applying an AttributeValueVisitor to each value.
void	AttributeValueVisitor.visitingAttributeValue(String objTraverseID, String attrName, CyAttributes attrs, Object[] keySpace, Object visitedValue) Perform whatever operations are desired on the given attribute value.

Uses of CyAttributes in cytoscape.data.ontology.readers

Methods in cytoscape.data.ontology.readers that return CyAttributes

CyAttributes

OBOFlatFileReader.getTermsAttributes() DOCUMENT ME!

Uses of CyAttributes in cytoscape.data.readers

Methods in cytoscape.data.readers with parameters of type CyAttributes

static void	CyAttributesReader.loadAttributes(CyAttributes cyAttrs, Reader fileIn) DOCUMENT ME!
void	CyAttributesReader.loadAttributesInternal(CyAttributes cyAttrs, Reader fileIn) DOCUMENT ME!

Uses of CyAttributes in cytoscape.data.writers

Constructors in cytoscape.data.writers with parameters of type CyAttributes

CyAttributesWriter(CyAttributes attributes, String attributeName, Writer fileWriter)
Creates a new CyAttributesWriter2 object.

Uses of CyAttributes in cytoscape.dialogs

Methods in cytoscape.dialogs with parameters of type CyAttributes

protected Component

EdgeAttributesPopupDetails.getContentComponent(CyAttributes edgeAttributes, String name)

Constructors in cytoscape.dialogs with parameters of type CyAttributes

EdgeAttributesPopupDetails(Frame parentFrame, String name, CyAttributes edgeAttributes)
Creates a new EdgeAttributesPopupDetails object.

LabelTextPanel(CyAttributes nodeAttribs, MutableString writeHere)
Creates a new LabelTextPanel object.

Uses of CyAttributes in cytoscape.visual.calculators

Methods in cytoscape.visual.calculators with parameters of type CyAttributes

protected Map<String,Object>	AbstractCalculator.getAttrBundle(String canonicalName, CyAttributes cyAttrs) Returns a map of attribute names to single values.
protected JPanel	AbstractCalculator.getUI(CyAttributes attr, JDialog parent, CyNetwork network) Deprecated. will be removed in the next release (2.8 or 3.0)

Constructors in cytoscape.visual.calculators with parameters of type CyAttributes

AbstractCalculator.CalculatorUI(CyAttributes attr, JDialog parent, CyNetwork network)
Deprecated.

Uses of CyAttributes in cytoscape.visual.ui

Methods in cytoscape.visual.ui with parameters of type CyAttributes

static Set<Object>

MappingKeyFactory.getKeySet(String attrName, CyAttributes attrs, ObjectMapping mapping, boolean isNode)

Uses of CyAttributes in cytoscape.visual.ui.editors.continuous

Methods in cytoscape.visual.ui.editors.continuous with parameters of type CyAttributes

static Double[]

MinMaxDialog.getMinMax(double min, double max, CyAttributes attr, String attrName) DOCUMENT ME!