Cytoscape 2.8.0 API

Uses of Package
cytoscape.visual

Packages that use cytoscape.visual
cytoscape Core Cytoscape Classes. 
cytoscape.data.readers Reader classes for the basic data types in cytoscape.data. 
cytoscape.data.webservice   
cytoscape.ding   
cytoscape.view Classes that provide a window to display a graph and UI components connected to that window, such as the menus. 
cytoscape.visual Framework for generalized mappings from graph attributes to visual attributes. 
cytoscape.visual.calculators Objects that calculate from the data attributes the value for one visual attribute, such as color, shape, or size. 
cytoscape.visual.customgraphic   
cytoscape.visual.mappings The Mappings are used by Calculators to map graph attributes to visual attribute values. 
cytoscape.visual.mappings.continuous Mappings from a continuous numerical input to a particular visual attribute. 
cytoscape.visual.mappings.discrete Mappings from a discrete-valued input to a particular visual attribute. 
cytoscape.visual.mappings.rangecalculators   
cytoscape.visual.parsers Translates visual attribute values to and from their String representation. 
cytoscape.visual.properties   
cytoscape.visual.strokes The WidthStroke objects in this package should NOT be used directly by anyone other than the LineStyle enum!!!! Seriously, DON'T USE THESE CLASSES!!! 
cytoscape.visual.ui Top-level UI components for the cytoscape.visual package. 
cytoscape.visual.ui.editors.continuous   
cytoscape.visual.ui.editors.discrete   
cytoscape.visual.ui.icon   
 

Classes in cytoscape.visual used by cytoscape
VisualMappingManager
          Top-level class for controlling the visual appearance of nodes and edges according to data attributes, as well as some global visual attributes.
VisualStyle
          This class encapsulates a full set of visual mapping specifications for Cytoscape.
 

Classes in cytoscape.visual used by cytoscape.data.readers
VisualPropertyType
          Enum for calculator types.
This will replace public constants defined in VizMapperUI class.
This Enum defines visual attributes used in Cytoscape.
 

Classes in cytoscape.visual used by cytoscape.data.webservice
VisualStyle
          This class encapsulates a full set of visual mapping specifications for Cytoscape.
 

Classes in cytoscape.visual used by cytoscape.ding
VisualMappingManager
          Top-level class for controlling the visual appearance of nodes and edges according to data attributes, as well as some global visual attributes.
VisualStyle
          This class encapsulates a full set of visual mapping specifications for Cytoscape.
 

Classes in cytoscape.visual used by cytoscape.view
VisualMappingManager
          Top-level class for controlling the visual appearance of nodes and edges according to data attributes, as well as some global visual attributes.
VisualStyle
          This class encapsulates a full set of visual mapping specifications for Cytoscape.
 

Classes in cytoscape.visual used by cytoscape.visual
Appearance
          A class that holds the appearance information for NodeViews and EdgeViews.
Arrow
          This class is a replacement for the yFiles Arrow class.
ArrowShape
          Defines arrow shapes.
This replaces constants defined in Arrow.java.
CalculatorCatalog
          Stores various types of Calculators from data attributes to an attribute of a specified type.
DuplicateCalculatorNameException
          This Exception is thrown when one attempts to add a Calculator to a CalculatorCatalog that already has a Calculator of the same name and interface type.
EdgeAppearance
          Objects of this class hold data describing the appearance of an Edge.
EdgeAppearanceCalculator
          This class calculates the appearance of an Edge.
GlobalAppearance
          Objects of this class hold data describing global appearance attributes of the graph window.
GlobalAppearanceCalculator
          This class calculates global visual attributes such as the background color of the graph window.
LabelPosition
          Deprecated.  
LineStyle
          Define line stroke.
NodeAppearance
          Objects of this class hold data describing the appearance of a Node.
NodeAppearanceCalculator
          This class calculates the appearance of a Node.
NodeShape
           
SubjectBase
          Abstract Base Class for Subject in the Subject / Observer Pattern.
VisualProperty
          Represents a visual property.
VisualPropertyDependency
          Define dependency of visual properties.
VisualPropertyDependency.Definition
          An enum that lists the possible dependencies.
VisualPropertyType
          Enum for calculator types.
This will replace public constants defined in VizMapperUI class.
This Enum defines visual attributes used in Cytoscape.
VisualStyle
          This class encapsulates a full set of visual mapping specifications for Cytoscape.
 

Classes in cytoscape.visual used by cytoscape.visual.calculators
Appearance
          A class that holds the appearance information for NodeViews and EdgeViews.
VisualPropertyType
          Enum for calculator types.
This will replace public constants defined in VizMapperUI class.
This Enum defines visual attributes used in Cytoscape.
 

Classes in cytoscape.visual used by cytoscape.visual.customgraphic
SubjectBase
          Abstract Base Class for Subject in the Subject / Observer Pattern.
 

Classes in cytoscape.visual used by cytoscape.visual.mappings
SubjectBase
          Abstract Base Class for Subject in the Subject / Observer Pattern.
VisualPropertyType
          Enum for calculator types.
This will replace public constants defined in VizMapperUI class.
This Enum defines visual attributes used in Cytoscape.
 

Classes in cytoscape.visual used by cytoscape.visual.mappings.continuous
VisualPropertyType
          Enum for calculator types.
This will replace public constants defined in VizMapperUI class.
This Enum defines visual attributes used in Cytoscape.
 

Classes in cytoscape.visual used by cytoscape.visual.mappings.discrete
VisualPropertyType
          Enum for calculator types.
This will replace public constants defined in VizMapperUI class.
This Enum defines visual attributes used in Cytoscape.
 

Classes in cytoscape.visual used by cytoscape.visual.mappings.rangecalculators
NodeShape
           
 

Classes in cytoscape.visual used by cytoscape.visual.parsers
Arrow
          This class is a replacement for the yFiles Arrow class.
ArrowShape
          Defines arrow shapes.
This replaces constants defined in Arrow.java.
LabelPosition
          Deprecated.  
LineStyle
          Define line stroke.
NodeShape
           
 

Classes in cytoscape.visual used by cytoscape.visual.properties
VisualProperty
          Represents a visual property.
VisualPropertyDependency
          Define dependency of visual properties.
VisualPropertyType
          Enum for calculator types.
This will replace public constants defined in VizMapperUI class.
This Enum defines visual attributes used in Cytoscape.
 

Classes in cytoscape.visual used by cytoscape.visual.strokes
LineStyle
          Define line stroke.
 

Classes in cytoscape.visual used by cytoscape.visual.ui
LabelPosition
          Deprecated.  
VisualPropertyType
          Enum for calculator types.
This will replace public constants defined in VizMapperUI class.
This Enum defines visual attributes used in Cytoscape.
VisualStyle
          This class encapsulates a full set of visual mapping specifications for Cytoscape.
 

Classes in cytoscape.visual used by cytoscape.visual.ui.editors.continuous
VisualPropertyType
          Enum for calculator types.
This will replace public constants defined in VizMapperUI class.
This Enum defines visual attributes used in Cytoscape.
 

Classes in cytoscape.visual used by cytoscape.visual.ui.editors.discrete
VisualPropertyType
          Enum for calculator types.
This will replace public constants defined in VizMapperUI class.
This Enum defines visual attributes used in Cytoscape.
 

Classes in cytoscape.visual used by cytoscape.visual.ui.icon
ArrowShape
          Defines arrow shapes.
This replaces constants defined in Arrow.java.
LineStyle
          Define line stroke.
NodeShape
           
 


Cytoscape 2.8.0 API

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