Uses of Interface
giny.model.Edge

Packages that use Edge

cytoscape	Core Cytoscape Classes.
cytoscape.data	Basic data classes used by Cytoscape.
cytoscape.giny
cytoscape.view	Classes that provide a window to display a graph and UI components connected to that window, such as the menus.
cytoscape.visual	Framework for generalized mappings from graph attributes to visual attributes.
cytoscape.visual.calculators	Objects that calculate from the data attributes the value for one visual attribute, such as color, shape, or size.
ding.view
fing.model
giny.model
giny.view

Uses of Edge in cytoscape

Classes in cytoscape that implement Edge

class

CyEdge

Methods in cytoscape with parameters of type Edge

CyEdge	CyNetwork.addEdge(Edge cytoscape_edge) Add a edge to this Network that already exists in Cytoscape
boolean	CyNetwork.isSelected(Edge edge) Returns the selected state of the given edge.
void	CyNetwork.setSelectedEdgeState(Edge edge, boolean selected_state) Sets the selected state of a single edge.

Uses of Edge in cytoscape.data

Methods in cytoscape.data that return types with arguments of type Edge

Set<Edge>

SelectFilter.setSelectedEdges(Collection<Edge> edgesToSet, boolean newState) Sets the selected state defined by the second argument for all Edges contained in the first argument, which should be a Collection of Edge objects contained in the referenced GraphPerspective.

Methods in cytoscape.data with parameters of type Edge

static String	Semantics.getInteractionType(CyNetwork network, Edge edge) Returns the interaction type of the given edge.
boolean	SelectFilter.isSelected(Edge edge) Returns true if the argument is a selected Edge in the referenced GraphPerspective, false otherwise.
boolean	SelectFilter.setSelected(Edge edge, boolean newState) If the first argument is an Edge in the referenced GraphPerspective, sets its selected state to the value of the second argument.

Method parameters in cytoscape.data with type arguments of type Edge

Set<Edge>

SelectFilter.setSelectedEdges(Collection<Edge> edgesToSet, boolean newState) Sets the selected state defined by the second argument for all Edges contained in the first argument, which should be a Collection of Edge objects contained in the referenced GraphPerspective.

Uses of Edge in cytoscape.giny

Methods in cytoscape.giny with parameters of type Edge

CyEdge	FingCyNetwork.addEdge(Edge cytoscape_edge) Add a edge to this Network that already exists in Cytoscape
CyNetwork	CytoscapeRootGraph.createNetwork(Node[] nodes, Edge[] edges) Uses Code copied from ColtRootGraph to create a new CyNetwork.
CyNetwork	CytoscapeFingRootGraph.createNetwork(Node[] nodes, Edge[] edges) Creates a new Network
Object	FingCyNetwork.getEdgeAttributeValue(Edge edge, String attribute) Return the requested Attribute for the given Edge
String[]	FingCyNetwork.getNodeAttributesList(Edge[] edges) Return all available Attributes for the given Edges
boolean	FingCyNetwork.isSelected(Edge edge) Returns the selected state of the given edge.
boolean	FingCyNetwork.setEdgeAttributeValue(Edge edge, String attribute, Object value) Return the requested Attribute for the given Edge
void	FingCyNetwork.setSelectedEdgeState(Edge edge, boolean selected_state) Sets the selected state of an edge.

Uses of Edge in cytoscape.view

Methods in cytoscape.view that return Edge

static Edge[]	BasicGraphViewHandler.removeGraphViewEdges(GraphView graph_view, Edge[] edges) It removes the views of the edges in the array from the given giny.view.GraphView object.
static Edge[]	BasicGraphViewHandler.restoreGraphViewEdges(GraphView graph_view, Edge[] edges) It restores the views of the edges in the array in the given giny.view.GraphView object
static Edge[]	BasicGraphViewHandler.selectGraphViewEdges(GraphView graph_view, Edge[] edges) It selects the edges in the array in the given giny.view.GraphView object.
static Edge[]	BasicGraphViewHandler.unselectGraphViewEdges(GraphView graph_view, Edge[] edges) It unselects the edges in the array in the given giny.view.GraphView object

Methods in cytoscape.view with parameters of type Edge

static Edge[]	BasicGraphViewHandler.removeGraphViewEdges(GraphView graph_view, Edge[] edges) It removes the views of the edges in the array from the given giny.view.GraphView object.
static Edge[]	BasicGraphViewHandler.restoreGraphViewEdges(GraphView graph_view, Edge[] edges) It restores the views of the edges in the array in the given giny.view.GraphView object
static Edge[]	BasicGraphViewHandler.selectGraphViewEdges(GraphView graph_view, Edge[] edges) It selects the edges in the array in the given giny.view.GraphView object.
static Edge[]	BasicGraphViewHandler.unselectGraphViewEdges(GraphView graph_view, Edge[] edges) It unselects the edges in the array in the given giny.view.GraphView object

Uses of Edge in cytoscape.visual

Methods in cytoscape.visual with parameters of type Edge

void	EdgeAppearanceCalculator.calculateEdgeAppearance(EdgeAppearance appr, Edge edge, CyNetwork network) Using the rules defined by the default values and calculators in this object, compute an appearance for the requested Edge in the supplied CyNetwork.
EdgeAppearance	EdgeAppearanceCalculator.calculateEdgeAppearance(Edge edge, CyNetwork network) Using the rules defined by the default values and calculators in this object, compute an appearance for the requested Edge in the supplied CyNetwork.

Uses of Edge in cytoscape.visual.calculators

Methods in cytoscape.visual.calculators with parameters of type Edge

void	Calculator.apply(Appearance appr, Edge e, CyNetwork net) DOCUMENT ME!
void	AbstractCalculator.apply(Appearance appr, Edge e, CyNetwork net) DOCUMENT ME!

Uses of Edge in ding.view

Methods in ding.view with parameters of type Edge

EdgeView	DGraphView.getEdgeView(Edge edge) DOCUMENT ME!
EdgeView	DGraphView.removeEdgeView(Edge edge) Removes an EdgeView based on an Edge.

Uses of Edge in fing.model

Methods in fing.model that return Edge

Edge	FingEdgeDepot.getEdge(RootGraph root, int index, String id) This either instantiates a new edge or gets one from the recyclery, initializing it with the parameters specified.

Methods in fing.model with parameters of type Edge

void	FingEdgeDepot.recycleEdge(Edge node) Recycles an edge.

Uses of Edge in giny.model

Methods in giny.model that return Edge

abstract Edge[]	RootGraphChangeEvent.getCreatedEdges()
Edge	RootGraph.getEdge(int edge_index) Return the Edge with the given index in this RootGraph.
Edge	GraphPerspective.getEdge(int index) Return an Edge which is in this GraphPerspective.
abstract Edge[]	GraphPerspectiveChangeEvent.getHiddenEdges() Deprecated. Use getHiddenEdgeIndices() instead; the edges returned by this method may have undefined state.
abstract Edge[]	RootGraphChangeEvent.getRemovedEdges() Deprecated. Use getRemovedEdgeIndices() instead; the edges returned by this method may have undefined state.
abstract Edge[]	GraphPerspectiveChangeEvent.getRestoredEdges()
abstract Edge[]	GraphPerspectiveChangeEvent.getSelectedEdges() Deprecated. Nowhere in GraphPerspective is there functionality that specifies edge selection logic.
abstract Edge[]	GraphPerspectiveChangeEvent.getUnselectedEdges() Deprecated. Nowhere in GraphPerspective is there functionality that specifies edge un-selection logic.
Edge	GraphPerspective.hideEdge(Edge edge) If this GraphPerspective does not hide the given Edge, change it so that it does hide the edge.
Edge	RootGraph.removeEdge(Edge edge) Remove the given Edge from this RootGraph and all of its GraphPerspectives.
Edge	GraphPerspective.restoreEdge(Edge edge) If this GraphPerspective hides the given Edge, change it so that it does not hide the edge or the Nodes on which the edge is incident.

Methods in giny.model with parameters of type Edge

boolean	RootGraph.addMetaChild(Node parent, Edge child) Nodes and Edges comprise an additional directed graph through the contains-a relationship, in which a MetaParent Node contains each of its MetaChild Nodes and Edges.
boolean	RootGraph.containsEdge(Edge edge) Return true if the given Edge is in this RootGraph.
boolean	GraphPerspective.containsEdge(Edge edge) Return true if the given Edge is in this GraphPerspective.
boolean	GraphPerspective.containsEdge(Edge edge, boolean recurse) Return true if the given Edge is in this GraphPerspective.
GraphPerspective	RootGraph.createGraphPerspective(Node[] nodes, Edge[] edges) Create a new GraphPerspective with just the given Nodes and Edges (and all Nodes incident on the given Edges).
GraphPerspective	GraphPerspective.createGraphPerspective(Node[] nodes, Edge[] edges) Deprecated. Use RootGraph.createGraphPerspective(int[], int[]) instead.
int	RootGraph.createNode(Node[] nodes, Edge[] edges) Create a new Node in this RootGraph, and return its index.
int	RootGraph.getIndex(Edge edge) Return the index of the given Edge.
int	GraphPerspective.getIndex(Edge edge) Return the index of the given Edge in the underlying RootGraph.
Edge	GraphPerspective.hideEdge(Edge edge) If this GraphPerspective does not hide the given Edge, change it so that it does hide the edge.
boolean	RootGraph.isMetaChild(Node parent, Edge child) Nodes and Edges comprise an additional directed graph through the contains-a relationship, in which a MetaParent Node contains each of its MetaChild Nodes and Edges.
boolean	GraphPerspective.isMetaChild(Node parent, Edge child) Nodes and Edges comprise an additional directed graph through the contains-a relationship, in which a MetaParent Node contains each of its MetaChild Nodes and Edges.
boolean	RootGraph.isMetaParent(Edge child, Node parent) Nodes and Edges comprise an additional directed graph through the contains-a relationship, in which a MetaParent Node contains each of its MetaChild Nodes and Edges.
boolean	GraphPerspective.isMetaParent(Edge child, Node parent) Nodes and Edges comprise an additional directed graph through the contains-a relationship, in which a MetaParent Node contains each of its MetaChild Nodes and Edges.
List	RootGraph.metaParentsList(Edge edge) Deprecated. Use getEdgeMetaParentIndicesArray(int) instead.
List	GraphPerspective.metaParentsList(Edge edge) Nodes and Edges comprise an additional directed graph through the contains-a relationship, in which a MetaParent Node contains each of its MetaChild Nodes and Edges.
Edge	RootGraph.removeEdge(Edge edge) Remove the given Edge from this RootGraph and all of its GraphPerspectives.
Edge	GraphPerspective.restoreEdge(Edge edge) If this GraphPerspective hides the given Edge, change it so that it does not hide the edge or the Nodes on which the edge is incident.

Uses of Edge in giny.view

Methods in giny.view that return Edge

Edge	EdgeView.getEdge()
abstract Edge[]	GraphViewChangeEvent.getHiddenEdges()
abstract Edge[]	GraphViewChangeEvent.getRestoredEdges()
abstract Edge[]	GraphViewChangeEvent.getSelectedEdges()
abstract Edge[]	GraphViewChangeEvent.getUnselectedEdges()

Methods in giny.view with parameters of type Edge

EdgeView	GraphView.getEdgeView(Edge edge)
EdgeView	GraphView.removeEdgeView(Edge edge) This will entirely remove a NodeView/EdgeView from the GraphView.