Uses of Interface
org.cytoscape.view.model.View

Packages that use View

org.cytoscape.application.swing	This package defines the various interfaces, abstract classes, and enums that represent the Cytoscape Swing Application API.
org.cytoscape.io.write	This package provides factory interfaces to be used by anyone wishing to provide export or writing capabilities to the rest of Cytoscape.
org.cytoscape.task	This package provides base classes for common task factory types as well as their associated task types found in Cytoscape.
org.cytoscape.view.layout	This package provides access to the available layout algorithms, as well as provides abstract layout classes and layout information containers for the convenience of implementing other layout algorithms.
org.cytoscape.view.model	Module for View Models and Visual Properties.
org.cytoscape.view.model.events	Definitions for View-Model related events and their listeners.
org.cytoscape.view.presentation	API set for rendering engines (visualizers).
org.cytoscape.view.presentation.customgraphics	This package provides an API for augmenting a RenderingEngines node rendering with custom graphics.
org.cytoscape.view.presentation.property.values	Interfaces for VisualPropertyValues -- ArrowShape, LineType and NodeShape
org.cytoscape.view.vizmap	Visual Mapping basic API module.
org.cytoscape.view.vizmap.mappings	APIs for different mapping functions -- continuous mapping, discrete mapping and pass through mapping.

Uses of View in org.cytoscape.application.swing

Methods in org.cytoscape.application.swing with parameters of type View

CyMenuItem	CyEdgeViewContextMenuFactory.createMenuItem(CyNetworkView netView, View<CyEdge> edgeView) This method should return a CyMenuItem to be added to the context menu of the specified edge view.
CyMenuItem	CyNodeViewContextMenuFactory.createMenuItem(CyNetworkView netView, View<CyNode> nodeView) This method should return a CyMenuItem to be added to the context menu of the specified node view.

Constructor parameters in org.cytoscape.application.swing with type arguments of type View

AbstractViewUpdater(VisualProperty<S> vp, String columnName, Map<CyRow,View<?>> rowViewMap)
Constructor.

Uses of View in org.cytoscape.io.write

Methods in org.cytoscape.io.write with parameters of type View

CyWriter	PresentationWriterManager.getWriter(View<?> view, RenderingEngine<?> re, CyFileFilter filter, File file) Returns the CyWriter Task that will attempt to write the specified view to the specified file of the specified file type.
CyWriter	PresentationWriterManager.getWriter(View<?> view, RenderingEngine<?> re, CyFileFilter filter, OutputStream os) Returns the CyWriter Task that will attempt to write the specified view to the specified output stream of the specified file type.

Uses of View in org.cytoscape.task

Fields in org.cytoscape.task declared as View

protected View<CyEdge>	AbstractEdgeViewTask.edgeView The edge view that descendant tasks will operate on.
protected View<CyNode>	AbstractNodeViewTask.nodeView The node view that descendants of this class will operate on.

Methods in org.cytoscape.task with parameters of type View

TaskIterator	EdgeViewTaskFactory.createTaskIterator(View<CyEdge> edgeView, CyNetworkView networkView) Creates a new TaskIterator using the given edge view and network view.
TaskIterator	NodeViewTaskFactory.createTaskIterator(View<CyNode> nodeView, CyNetworkView networkView) Provisions this factory with the node view and its associated network view, both of which will be passed into any task that will be created by this factory.
boolean	EdgeViewTaskFactory.isReady(View<CyEdge> edgeView, CyNetworkView networkView) Returns true if this task factory is ready to produce a TaskIterator.
boolean	AbstractEdgeViewTaskFactory.isReady(View<CyEdge> edgeView, CyNetworkView networkView) Returns true if the supplied edge and network views are not null.
boolean	NodeViewTaskFactory.isReady(View<CyNode> nodeView, CyNetworkView networkView) Returns true if the node view and network view are in a state that is ready to be processed by the generated tasks and false otherwise.
boolean	AbstractNodeViewTaskFactory.isReady(View<CyNode> nodeView, CyNetworkView networkView) Returns true of the supplied network and node views are not null.

Constructors in org.cytoscape.task with parameters of type View

AbstractEdgeViewTask(View<CyEdge> edgeView, CyNetworkView netView)
Base constructor for all tasks that need an edge view to operate on.

AbstractNodeViewTask(View<CyNode> nodeView, CyNetworkView netView)
Base class constructor for all tasks that need to operate on a node view and possibly its associated network view.

Uses of View in org.cytoscape.view.layout

Fields in org.cytoscape.view.layout with type parameters of type View

static Set<View<CyNode>>	CyLayoutAlgorithm.ALL_NODE_VIEWS A convenience declaration for an empty set signifying that all node views should be laid out when creating the task iterator.
protected Set<View<CyNode>>	AbstractLayoutTask.nodesToLayOut The node views that will be laid out by the algorithm.

Methods in org.cytoscape.view.layout that return View

View<CyNode>

LayoutNode.getNodeView() Accessor function to return the View associated with this LayoutNode.

Methods in org.cytoscape.view.layout with parameters of type View

protected void

LayoutPartition.addNode(CyNetwork network, View<CyNode> nv, boolean locked) Add a node to this partition.

Method parameters in org.cytoscape.view.layout with type arguments of type View

TaskIterator	CyLayoutAlgorithm.createTaskIterator(CyNetworkView networkView, Object layoutContext, Set<View<CyNode>> nodesToLayOut, String layoutAttribute) Creates a task iterator containing the layout tasks.
boolean	CyLayoutAlgorithm.isReady(CyNetworkView networkView, Object layoutContext, Set<View<CyNode>> nodesToLayOut, String layoutAttribute) Returns true if the task factory is ready to produce a task iterator.
boolean	AbstractLayoutAlgorithm.isReady(CyNetworkView view, Object tunableContext, Set<View<CyNode>> nodesToLayout, String attributeName)

Constructors in org.cytoscape.view.layout with parameters of type View

LayoutNode(View<CyNode> nodeView, int index, CyRow row)
The main constructor for a LayoutNode.

Constructor parameters in org.cytoscape.view.layout with type arguments of type View

AbstractLayoutTask(String displayName, CyNetworkView networkView, Set<View<CyNode>> nodesToLayOut, String layoutAttribute, UndoSupport undo)
Constructor.

AbstractPartitionLayoutTask(String displayName, boolean singlePartition, CyNetworkView networkView, Set<View<CyNode>> nodesToLayOut, String layoutAttribute, UndoSupport undo)
Creates a new AbstractPartitionLayoutTask object.

LayoutPartition(CyNetworkView networkView, Collection<View<CyNode>> nodeSet, EdgeWeighter edgeWeighter)
LayoutPartition: use this constructor to create a LayoutPartition that includes the entire network.

Uses of View in org.cytoscape.view.model

Subinterfaces of View in org.cytoscape.view.model

interface

CyNetworkView Additional methods for CyNetworkView.

Methods in org.cytoscape.view.model that return View

View<CyEdge>	CyNetworkView.getEdgeView(CyEdge edge) Returns a View for a specified Edge.
View<CyNode>	CyNetworkView.getNodeView(CyNode node) Returns a View for a specified Node.

Methods in org.cytoscape.view.model that return types with arguments of type View

Collection<View<? extends CyIdentifiable>>	CyNetworkView.getAllViews() Returns a list of all View including those for Nodes, Edges, and Network.
Collection<View<CyEdge>>	CyNetworkView.getEdgeViews() Returns a list of Views for all CyEdges in the network.
Collection<View<CyNode>>	CyNetworkView.getNodeViews() Returns a list of Views for all CyNodes in the network.

Uses of View in org.cytoscape.view.model.events

Methods in org.cytoscape.view.model.events that return View

View<T>

ViewChangeRecord.getView() Returns the view that has been changed.

Methods in org.cytoscape.view.model.events that return types with arguments of type View

Collection<View<CyEdge>>	AddedEdgeViewsEvent.getEdgeViews() Returns new edge view added to the source network view object.
Collection<View<CyNode>>	AddedNodeViewsEvent.getNodeViews() Returns new node view object.

Constructors in org.cytoscape.view.model.events with parameters of type View

ViewChangeRecord(View<T> view, VisualProperty<?> vp, Object value)
Constructor.

Constructor parameters in org.cytoscape.view.model.events with type arguments of type View

AboutToRemoveEdgeViewsEvent(CyNetworkView source, Collection<View<CyEdge>> payload)
Creates the event for about to be removed edge views.

AboutToRemoveNodeViewsEvent(CyNetworkView source, Collection<View<CyNode>> payload)
Creates the event for about to be removed node views.

AddedEdgeViewsEvent(CyNetworkView source, Collection<View<CyEdge>> edgeViews)
Creates the event for new edge views.

AddedNodeViewsEvent(CyNetworkView source, Collection<View<CyNode>> nodeViews)
Creates the event for a new node view.

Uses of View in org.cytoscape.view.presentation

Methods in org.cytoscape.view.presentation that return View

View<T>

RenderingEngine.getViewModel() Returns View being rendered.

Methods in org.cytoscape.view.presentation with parameters of type View

RenderingEngine<T>	RenderingEngineFactory.createRenderingEngine(Object visualizationContainer, View<T> viewModel) A view model can have multiple presentations.
Collection<RenderingEngine<?>>	RenderingEngineManager.getRenderingEngines(View<?> viewModel) Get rendering engines for the given view model.

Uses of View in org.cytoscape.view.presentation.customgraphics

Methods in org.cytoscape.view.presentation.customgraphics with parameters of type View

List<T>

CyCustomGraphics.getLayers(CyNetworkView networkView, View<? extends CyIdentifiable> grView) Get layers that belong to this object.

Uses of View in org.cytoscape.view.presentation.property.values

Methods in org.cytoscape.view.presentation.property.values with parameters of type View

Point2D	Handle.calculateHandleLocation(CyNetworkView netView, View<CyEdge> edgeView) Calculate absolute position of this handle for the given edge view.
Handle	HandleFactory.createHandle(CyNetworkView graphView, View<CyEdge> view, double x, double y) Creates a new instance of the Handle.
void	Handle.defineHandle(CyNetworkView netView, View<CyEdge> edgeView, double x, double y) Define this handle.

Uses of View in org.cytoscape.view.vizmap

Methods in org.cytoscape.view.vizmap with parameters of type View

void	VisualStyle.apply(CyRow row, View<? extends CyIdentifiable> view) Apply Visual Property values only to the given View Object (node or edge).
void	VisualMappingFunction.apply(CyRow row, View<? extends CyIdentifiable> view) Apply mapping to the view model.

Uses of View in org.cytoscape.view.vizmap.mappings

Methods in org.cytoscape.view.vizmap.mappings with parameters of type View

void	AbstractVisualMappingFunction.apply(CyRow row, View<? extends CyIdentifiable> view)