Cytoscape 3.0.1 API

Uses of Package
org.cytoscape.view.model

Packages that use org.cytoscape.view.model
org.cytoscape.app This is the Cytoscape App API, which supports development of Cytoscape 3.X apps in a manner similar to apps developed in Cytoscape 2.X. 
org.cytoscape.application This package provides Cytoscape version number, application-wide setting, basic access to current network, selected networks, views and rendering engines. 
org.cytoscape.application.events This package provides application events/listeners, including Cytoscape startup/shutdown, setCurrentNetwork/setCurrentNetworkView/ setSelectedNetwork. 
org.cytoscape.application.swing This package defines the various interfaces, abstract classes, and enums that represent the Cytoscape Swing Application API. 
org.cytoscape.io.read Handle importing Cytoscape data (network, attributes, session, properties, etc) from files/URLs. 
org.cytoscape.io.write This package provides factory interfaces to be used by anyone wishing to provide export or writing capabilities to the rest of Cytoscape. 
org.cytoscape.session This package contains the interfaces and classes necessary to capturing, storing, and retrieving the state of a Cytoscape session. 
org.cytoscape.task This package provides base classes for common task factory types as well as their associated task types found in Cytoscape. 
org.cytoscape.task.create This package provides a variety of task factory interfaces for creating new instances of network and other objects. 
org.cytoscape.task.write This package contains a set of task factory interfaces used for exporting or writing a variety of Cytoscape objects to files. 
org.cytoscape.view.layout This package provides access to the available layout algorithms, as well as provides abstract layout classes and layout information containers for the convenience of implementing other layout algorithms. 
org.cytoscape.view.model Module for View Models and Visual Properties. 
org.cytoscape.view.model.events Definitions for View-Model related events and their listeners. 
org.cytoscape.view.presentation API set for rendering engines (visualizers). 
org.cytoscape.view.presentation.customgraphics This package provides an API for augmenting a RenderingEngines node rendering with custom graphics. 
org.cytoscape.view.presentation.property Implementations of basic VisualProperty objects and VisualLexicons. 
org.cytoscape.view.presentation.property.values Interfaces for VisualPropertyValues -- ArrowShape, LineType and NodeShape 
org.cytoscape.view.vizmap Visual Mapping basic API module. 
org.cytoscape.view.vizmap.events Events for Visual Mappings. 
org.cytoscape.view.vizmap.gui.editor Provides editors for Visual Properties and editor managers for VizMap GUI. 
org.cytoscape.view.vizmap.gui.event Provides events and listeners of LexiconState, visual style switch and vizMap event, as well as VizMap event handler manager. 
org.cytoscape.view.vizmap.gui.util Create discrete mapping for a given set of attribute values 
org.cytoscape.view.vizmap.mappings APIs for different mapping functions -- continuous mapping, discrete mapping and pass through mapping. 
 

Classes in org.cytoscape.view.model used by org.cytoscape.app
CyNetworkViewFactory
          Factory for CyNetworkView objects.
CyNetworkViewManager
          Basic access to network views in an instance of Cytoscape.
 

Classes in org.cytoscape.view.model used by org.cytoscape.application
CyNetworkView
          Additional methods for CyNetworkView.
 

Classes in org.cytoscape.view.model used by org.cytoscape.application.events
CyNetworkView
          Additional methods for CyNetworkView.
 

Classes in org.cytoscape.view.model used by org.cytoscape.application.swing
CyNetworkView
          Additional methods for CyNetworkView.
CyNetworkViewManager
          Basic access to network views in an instance of Cytoscape.
View
          The base interface that defines methods used to set visual properties for nodes, edges, and networks.
VisualProperty
          An object which represents a type of visual entity, such as node color, size, etc.
 

Classes in org.cytoscape.view.model used by org.cytoscape.io.read
CyNetworkView
          Additional methods for CyNetworkView.
 

Classes in org.cytoscape.view.model used by org.cytoscape.io.write
CyNetworkView
          Additional methods for CyNetworkView.
View
          The base interface that defines methods used to set visual properties for nodes, edges, and networks.
 

Classes in org.cytoscape.view.model used by org.cytoscape.session
CyNetworkView
          Additional methods for CyNetworkView.
 

Classes in org.cytoscape.view.model used by org.cytoscape.task
CyNetworkView
          Additional methods for CyNetworkView.
View
          The base interface that defines methods used to set visual properties for nodes, edges, and networks.
 

Classes in org.cytoscape.view.model used by org.cytoscape.task.create
CyNetworkView
          Additional methods for CyNetworkView.
 

Classes in org.cytoscape.view.model used by org.cytoscape.task.write
CyNetworkView
          Additional methods for CyNetworkView.
 

Classes in org.cytoscape.view.model used by org.cytoscape.view.layout
CyNetworkView
          Additional methods for CyNetworkView.
View
          The base interface that defines methods used to set visual properties for nodes, edges, and networks.
 

Classes in org.cytoscape.view.model used by org.cytoscape.view.model
CyNetworkView
          Additional methods for CyNetworkView.
NullDataType
          An empty/null data type marker interface for Visual Properties holding no actual data.
Range
          Defines a range of values for VisualPropertys.
View
          The base interface that defines methods used to set visual properties for nodes, edges, and networks.
VisualLexiconNode
          A node in the visual property tree (lexicon).
VisualProperty
          An object which represents a type of visual entity, such as node color, size, etc.
 

Classes in org.cytoscape.view.model used by org.cytoscape.view.model.events
CyNetworkView
          Additional methods for CyNetworkView.
CyNetworkViewManager
          Basic access to network views in an instance of Cytoscape.
View
          The base interface that defines methods used to set visual properties for nodes, edges, and networks.
VisualProperty
          An object which represents a type of visual entity, such as node color, size, etc.
 

Classes in org.cytoscape.view.model used by org.cytoscape.view.presentation
View
          The base interface that defines methods used to set visual properties for nodes, edges, and networks.
VisualLexicon
          A RenderingEngine should provide one, immutable lexicon implementing this interface.
VisualProperty
          An object which represents a type of visual entity, such as node color, size, etc.
 

Classes in org.cytoscape.view.model used by org.cytoscape.view.presentation.customgraphics
CyNetworkView
          Additional methods for CyNetworkView.
View
          The base interface that defines methods used to set visual properties for nodes, edges, and networks.
 

Classes in org.cytoscape.view.model used by org.cytoscape.view.presentation.property
AbstractVisualProperty
          An abstract implementation of VisualProperty that omits the methods dealing with serializing data.
NullDataType
          An empty/null data type marker interface for Visual Properties holding no actual data.
Range
          Defines a range of values for VisualPropertys.
Visualizable
          Marker interface for data types used by higher-level Visual Properties such as NODE, EDGE, or NETWORK.
VisualLexicon
          A RenderingEngine should provide one, immutable lexicon implementing this interface.
VisualLexiconNode
          A node in the visual property tree (lexicon).
VisualProperty
          An object which represents a type of visual entity, such as node color, size, etc.
 

Classes in org.cytoscape.view.model used by org.cytoscape.view.presentation.property.values
CyNetworkView
          Additional methods for CyNetworkView.
View
          The base interface that defines methods used to set visual properties for nodes, edges, and networks.
 

Classes in org.cytoscape.view.model used by org.cytoscape.view.vizmap
CyNetworkView
          Additional methods for CyNetworkView.
View
          The base interface that defines methods used to set visual properties for nodes, edges, and networks.
VisualLexicon
          A RenderingEngine should provide one, immutable lexicon implementing this interface.
VisualProperty
          An object which represents a type of visual entity, such as node color, size, etc.
 

Classes in org.cytoscape.view.model used by org.cytoscape.view.vizmap.events
CyNetworkView
          Additional methods for CyNetworkView.
 

Classes in org.cytoscape.view.model used by org.cytoscape.view.vizmap.gui.editor
VisualProperty
          An object which represents a type of visual entity, such as node color, size, etc.
 

Classes in org.cytoscape.view.model used by org.cytoscape.view.vizmap.gui.event
VisualProperty
          An object which represents a type of visual entity, such as node color, size, etc.
 

Classes in org.cytoscape.view.model used by org.cytoscape.view.vizmap.gui.util
VisualProperty
          An object which represents a type of visual entity, such as node color, size, etc.
 

Classes in org.cytoscape.view.model used by org.cytoscape.view.vizmap.mappings
View
          The base interface that defines methods used to set visual properties for nodes, edges, and networks.
VisualProperty
          An object which represents a type of visual entity, such as node color, size, etc.
 


Cytoscape 3.0.1 API

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