Uses of Interface
cytoscape.data.readers.GraphReader

Packages that use GraphReader

cytoscape	Core Cytoscape Classes.
cytoscape.data	Basic data classes used by Cytoscape.
cytoscape.data.readers	Reader classes for the basic data types in cytoscape.data.
cytoscape.util	This package contains utility classes which are deemed generally useful, but which do not clearly belong to any other package.

Uses of GraphReader in cytoscape

Methods in cytoscape with parameters of type GraphReader

static CyNetwork

Cytoscape.createNetwork(GraphReader reader, boolean create_view, CyNetwork parent) Creates a cytoscape.data.CyNetwork from a reader.

Uses of GraphReader in cytoscape.data

Methods in cytoscape.data that return GraphReader

GraphReader	ImportHandler.getReader(String fileName) Gets the GraphReader that is capable of reading the specified file.
GraphReader	ImportHandler.getReader(URL url) Gets the GraphReader that is capable of reading URL.

Uses of GraphReader in cytoscape.data.readers

Classes in cytoscape.data.readers that implement GraphReader

class	AbstractGraphReader
class	GMLReader This class is responsible for converting a gml object tree into cytoscape objects New features to the current version: 1.
class	InteractionsReader Reader for graphs in the interactions file format.
class	NNFReader Graph file reader for NNF files.
class	XGMMLReader XGMML file reader. This version is Metanode-compatible.

Uses of GraphReader in cytoscape.util

Fields in cytoscape.util declared as GraphReader

protected GraphReader

CyFileFilter.reader

Methods in cytoscape.util that return GraphReader

GraphReader	XGMMLFileFilter.getReader(String fileName) Gets Graph Reader.
GraphReader	SIFFileFilter.getReader(String fileName) Gets Graph Reader.
GraphReader	NNFFileFilter.getReader(String fileName) Gets Graph Reader.
GraphReader	GMLFileFilter.getReader(String fileName) Gets GraphReader.
GraphReader	CyFileFilter.getReader(String fileName) Returns the reader.
GraphReader	XGMMLFileFilter.getReader(URL url, URLConnection conn) Gets Graph Reader.
GraphReader	SIFFileFilter.getReader(URL url, URLConnection conn) Gets Graph Reader.
GraphReader	NNFFileFilter.getReader(URL url, URLConnection conn) Gets Graph Reader.
GraphReader	GMLFileFilter.getReader(URL url, URLConnection conn) Gets Graph Reader.
GraphReader	CyFileFilter.getReader(URL url, URLConnection conn) Returns the reader.