Uses of Package
org.cytoscape.work

Packages that use org.cytoscape.work

Package	Description
org.cytoscape.app	This is the Cytoscape App API, which supports development of Cytoscape 3.X apps in a manner similar to apps developed in Cytoscape 2.X.
org.cytoscape.application.swing	This package defines the various interfaces, abstract classes, and enums that represent the Cytoscape Swing Application API.
org.cytoscape.command	Interface to support execution of tasks as commands, including the ability to get a list of namespaces, commands, and arguments, and then execute those commands with a set of arguments.
org.cytoscape.io.read	Handle importing Cytoscape data (network, attributes, session, properties, etc) from files/URLs.
org.cytoscape.io.webservice	Interfaces for SOAP/REST web service clients, web services that return results as networks or tables, or query results.
org.cytoscape.io.write	This package provides factory interfaces to be used by anyone wishing to provide export or writing capabilities to the rest of Cytoscape.
org.cytoscape.jobs	This package provides a mechanism for executing remote jobs from within Cytoscape.
org.cytoscape.task	This package provides base classes for common task factory types as well as their associated task types found in Cytoscape.
org.cytoscape.task.create	This package provides a variety of task factory interfaces for creating new instances of network and other objects.
org.cytoscape.task.edit	This package include a set of task factory interfaces that allow the modification or editing of various objects within Cytoscape.
org.cytoscape.task.read	This package contains a set of task factory interfaces for reading various Cytoscape objects from files and URLs.
org.cytoscape.task.select	This package includes a set of task factory interfaces for selecting, de-selecting and inverting selections of nodes, edges, or combinations of both based on specific criteria.
org.cytoscape.task.write	This package contains a set of task factory interfaces used for exporting or writing a variety of Cytoscape objects to files.
org.cytoscape.view.layout	This package provides access to the available layout algorithms, as well as provides abstract layout classes and layout information containers for the convenience of implementing other layout algorithms.
org.cytoscape.work	This package defines the task framework, where tasks are units of work.
org.cytoscape.work.properties
org.cytoscape.work.swing	This packages provides Swing-specific specialisations of concepts from work-api This includes TaskFactory, TaskManager, and TaskIterator.

Classes in org.cytoscape.work used by org.cytoscape.app

Class and Description
TaskManager Executes the Tasks found in the TaskIterator provided by a TaskFactory.

Classes in org.cytoscape.work used by org.cytoscape.application.swing

Class and Description
TaskFactory Returns an instance of a TaskIterator.

Classes in org.cytoscape.work used by org.cytoscape.command

Class and Description
AbstractTunableHandler Provides the standard implementation for most of the methods declared by the TunableHandler interface.
TaskIterator A TaskIterator provides the functionality of sequencing Tasks.
TaskObserver An observer that gets notified when an ObservableTask finishes executing.
Tunable An annotation type that can be applied to public fields or a methods in a Task object that allows the Task to be configured with user supplied information.
TunableHandler Interface for classes that deal with reading out and writing back Tunables and their properties.
TunableHandlerFactory A factory service to create a TunableHandler for a single type of object, determined by the type of the field or the return value of the getter method in the appropriate methods.

Classes in org.cytoscape.work used by org.cytoscape.io.read

Class and Description
AbstractTask A base class for tasks that need to be able to access the TaskIterator that contains them.
ProvidesTitle An annotation type that can be applied to a method which returns a String that will be used for the title of a Tunable user interface dialog window.
Task This interface specifies a unit of work to be executed asynchronously in its own Thread along with a user interface to display its progress, provide a means for the user to cancel the Task, and show information about any Exceptions thrown during its execution.
TaskIterator A TaskIterator provides the functionality of sequencing Tasks.
Tunable An annotation type that can be applied to public fields or a methods in a Task object that allows the Task to be configured with user supplied information.

Classes in org.cytoscape.work used by org.cytoscape.io.webservice

Class and Description
TaskIterator A TaskIterator provides the functionality of sequencing Tasks.

Classes in org.cytoscape.work used by org.cytoscape.io.write

Class and Description
Task This interface specifies a unit of work to be executed asynchronously in its own Thread along with a user interface to display its progress, provide a means for the user to cancel the Task, and show information about any Exceptions thrown during its execution.

Classes in org.cytoscape.work used by org.cytoscape.jobs

Class and Description
TaskMonitor Used by a Task's implementation run method to inform users of the status of its execution.

Classes in org.cytoscape.work used by org.cytoscape.task

Class and Description
AbstractTask A base class for tasks that need to be able to access the TaskIterator that contains them.
Task This interface specifies a unit of work to be executed asynchronously in its own Thread along with a user interface to display its progress, provide a means for the user to cancel the Task, and show information about any Exceptions thrown during its execution.
TaskFactory Returns an instance of a TaskIterator.
TaskIterator A TaskIterator provides the functionality of sequencing Tasks.

Classes in org.cytoscape.work used by org.cytoscape.task.create

Class and Description
TaskFactory Returns an instance of a TaskIterator.
TaskIterator A TaskIterator provides the functionality of sequencing Tasks.

Classes in org.cytoscape.work used by org.cytoscape.task.edit

Class and Description
TaskFactory Returns an instance of a TaskIterator.
TaskIterator A TaskIterator provides the functionality of sequencing Tasks.

Classes in org.cytoscape.work used by org.cytoscape.task.read

Class and Description
TaskFactory Returns an instance of a TaskIterator.
TaskIterator A TaskIterator provides the functionality of sequencing Tasks.
TaskObserver An observer that gets notified when an ObservableTask finishes executing.

Classes in org.cytoscape.work used by org.cytoscape.task.select

Class and Description
TaskIterator A TaskIterator provides the functionality of sequencing Tasks.

Classes in org.cytoscape.work used by org.cytoscape.task.write

Class and Description
TaskFactory Returns an instance of a TaskIterator.
TaskIterator A TaskIterator provides the functionality of sequencing Tasks.

Classes in org.cytoscape.work used by org.cytoscape.view.layout

Class and Description
AbstractTask A base class for tasks that need to be able to access the TaskIterator that contains them.
Task This interface specifies a unit of work to be executed asynchronously in its own Thread along with a user interface to display its progress, provide a means for the user to cancel the Task, and show information about any Exceptions thrown during its execution.
TaskIterator A TaskIterator provides the functionality of sequencing Tasks.
TaskMonitor Used by a Task's implementation run method to inform users of the status of its execution.
Tunable An annotation type that can be applied to public fields or a methods in a Task object that allows the Task to be configured with user supplied information.

Classes in org.cytoscape.work used by org.cytoscape.work

Class and Description
FinishStatus Indicates the status of a task iterator when it has finished for TaskObservers.
FinishStatus.Type
ObservableTask A Task that notifies its observers when it is finished executing.
Task This interface specifies a unit of work to be executed asynchronously in its own Thread along with a user interface to display its progress, provide a means for the user to cancel the Task, and show information about any Exceptions thrown during its execution.
TaskFactory Returns an instance of a TaskIterator.
TaskIterator A TaskIterator provides the functionality of sequencing Tasks.
TaskManager Executes the Tasks found in the TaskIterator provided by a TaskFactory.
TaskMonitor Used by a Task's implementation run method to inform users of the status of its execution.
TaskMonitor.Level Used by the showMessage method to indicate the severity of the message.
TaskObserver An observer that gets notified when an ObservableTask finishes executing.
Tunable An annotation type that can be applied to public fields or a methods in a Task object that allows the Task to be configured with user supplied information.
TunableHandler Interface for classes that deal with reading out and writing back Tunables and their properties.
TunableHandlerFactory A factory service to create a TunableHandler for a single type of object, determined by the type of the field or the return value of the getter method in the appropriate methods.
TunableMutator This is a type of tunable interceptor that reads and modifies the values annotated with the Tunable annotation.
TunableRecorder TunableRecorder is a special type of tunable interceptor that reads the state of the tunables but does not modify the value of the tunables.
TunableValidator.ValidationState The states the the validator can return.

Classes in org.cytoscape.work used by org.cytoscape.work.properties

Class and Description
TunableHandler Interface for classes that deal with reading out and writing back Tunables and their properties.
TunableHandlerFactory A factory service to create a TunableHandler for a single type of object, determined by the type of the field or the return value of the getter method in the appropriate methods.

Classes in org.cytoscape.work used by org.cytoscape.work.swing

Class and Description
AbstractTunableHandler Provides the standard implementation for most of the methods declared by the TunableHandler interface.
BasicTunableHandlerFactory A convenience implementation of TunableHandlerFactory that will construct a TunableHandler of the specified type given the TunableHandler in question has at least two constructors, one with Field, Object, Tunable parameters and the other with Method, Method, Object, Tunable parameters.
TaskManager Executes the Tasks found in the TaskIterator provided by a TaskFactory.
Tunable An annotation type that can be applied to public fields or a methods in a Task object that allows the Task to be configured with user supplied information.
TunableHandler Interface for classes that deal with reading out and writing back Tunables and their properties.
TunableHandlerFactory A factory service to create a TunableHandler for a single type of object, determined by the type of the field or the return value of the getter method in the appropriate methods.