Uses of Interface
cytoscape.task.TaskMonitor

Packages that use TaskMonitor

cytoscape.actions	UI classes that are attached to menu items in the menu or tool bar of the window.
cytoscape.data	Basic data classes used by Cytoscape.
cytoscape.data.readers	Reader classes for the basic data types in cytoscape.data.
cytoscape.data.writers
cytoscape.layout	Classes providing some kind of graph layout functionality.
cytoscape.plugin	Classes related to Cytoscape plugins.
cytoscape.task	Cytoscape Task Framework.
cytoscape.task.sample	Sample task, used to illustrate the Task framework.
cytoscape.task.ui	UI code related to task control.
cytoscape.util	This package contains utility classes which are deemed generally useful, but which do not clearly belong to any other package.
cytoscape.visual.customgraphic
cytoscape.visual.ui	Top-level UI components for the cytoscape.visual package.

Uses of TaskMonitor in cytoscape.actions

Methods in cytoscape.actions with parameters of type TaskMonitor

void	LoadNetworkTask.setTaskMonitor(TaskMonitor taskMonitor) Sets the Task Monitor.

Uses of TaskMonitor in cytoscape.data

Methods in cytoscape.data with parameters of type TaskMonitor

void	ExpressionData.copyToAttribs(CyAttributes nodeAttribs, TaskMonitor taskMonitor) Copies ExpressionData data structure into CyAttributes data structure.
File	ImportHandler.downloadFromURL(URL url, TaskMonitor taskMonitor) Download a temporary file from the given URL.

Constructors in cytoscape.data with parameters of type TaskMonitor

ExpressionData(String filename, String keyAttributeName, TaskMonitor taskMonitor)
Constructor.

ExpressionData(String filename, TaskMonitor taskMonitor)
Constructor.

Uses of TaskMonitor in cytoscape.data.readers

Methods in cytoscape.data.readers with parameters of type TaskMonitor

void	XGMMLReader.setTaskMonitor(TaskMonitor monitor) Sets the task monitor we want to use
void	NNFReader.setTaskMonitor(TaskMonitor monitor) Sets the task monitor we want to use
void	InteractionsReader.setTaskMonitor(TaskMonitor monitor) Sets the task monitor we want to use
void	GMLReader.setTaskMonitor(TaskMonitor monitor) Sets the task monitor we want to use
void	AbstractGraphReader.setTaskMonitor(TaskMonitor monitor) Set the task monitor to use for this reader

Constructors in cytoscape.data.readers with parameters of type TaskMonitor

CytoscapeSessionReader(String fileName, TaskMonitor monitor)
Creates a new CytoscapeSessionReader object.

CytoscapeSessionReader(URL sourceName, TaskMonitor monitor)
Constructor for remote file (specified by an URL)

GMLReader(String filename, TaskMonitor taskMonitor)
Constructor.

InteractionsReader(String filename, TaskMonitor monitor)
Creates an interaction reader based on the string file name.

InteractionsReader(String zip_entry, TaskMonitor monitor, boolean is_zip)
Creates an interaction reader based on a string consisting of data that has been read from a zip file.

NNFReader(String filename, TaskMonitor monitor)
Creates an interaction reader based on the string file name.

XGMMLReader(String fileName, TaskMonitor monitor)
Creates a new XGMMLReader object.

Uses of TaskMonitor in cytoscape.data.writers

Methods in cytoscape.data.writers with parameters of type TaskMonitor

static String	InteractionWriter.getInteractionString(CyNetwork network, TaskMonitor taskMonitor) Returns a SIF formatted string of the specified network.
static void	InteractionWriter.writeInteractions(CyNetwork network, Writer writer, TaskMonitor taskMonitor) Writes a SIF formatted string of the specified network to the specified writer.

Uses of TaskMonitor in cytoscape.layout

Fields in cytoscape.layout declared as TaskMonitor

protected static TaskMonitor	AbstractLayout.nullTaskMonitor
protected TaskMonitor	AbstractLayout.taskMonitor

Methods in cytoscape.layout with parameters of type TaskMonitor

abstract void	LayoutAdapter.doLayout(CyNetworkView networkView, TaskMonitor monitor) This method performs the layout on the current network, but assumes that the layout is part of an existing monitored task
void	CyLayoutAlgorithm.doLayout(CyNetworkView networkView, TaskMonitor monitor) This method performs the layout on the current network, but assumes that the layout is part of an existing monitored task
void	AbstractLayout.doLayout(CyNetworkView nview, TaskMonitor monitor) doLayout on specified network view with specified monitor.
void	LayoutTask.setTaskMonitor(TaskMonitor monitor) Sets the task monitor to be used for the layout.

Uses of TaskMonitor in cytoscape.plugin

Methods in cytoscape.plugin with parameters of type TaskMonitor

DownloadableInfo	PluginManager.download(DownloadableInfo Obj, TaskMonitor taskMonitor) Downloads given object to the temporary directory.
boolean	InstallableTheme.install(TaskMonitor taskMonitor)
boolean	InstallablePlugin.install(TaskMonitor taskMonitor)
boolean	Installable.install(TaskMonitor taskMonitor)
boolean	InstallableTheme.installToDir(File dir, TaskMonitor taskMonitor)
boolean	InstallablePlugin.installToDir(File dir, TaskMonitor taskMonitor)
boolean	Installable.installToDir(File dir, TaskMonitor taskMonitor)
void	PluginManagerInquireTask.setTaskMonitor(TaskMonitor monitor)
void	PluginManager.update(DownloadableInfo currentObj, DownloadableInfo newObj, TaskMonitor taskMonitor) Finds the given version of the new object, sets the old object for deletion and downloads new object to temporary directory
boolean	InstallableTheme.update(DownloadableInfo newInfoObj, TaskMonitor taskMonitor)
boolean	InstallablePlugin.update(DownloadableInfo newInfoObj, TaskMonitor taskMonitor)
boolean	Installable.update(DownloadableInfo newObj, TaskMonitor taskMonitor)

Uses of TaskMonitor in cytoscape.task

Methods in cytoscape.task with parameters of type TaskMonitor

void	Task.setTaskMonitor(TaskMonitor monitor) Lets this Task know who it should report to regarding task progress, errors, status description, etc.

Uses of TaskMonitor in cytoscape.task.sample

Methods in cytoscape.task.sample with parameters of type TaskMonitor

void	SampleTask.setTaskMonitor(TaskMonitor taskMonitor) Sets the Task Monitor.

Uses of TaskMonitor in cytoscape.task.ui

Classes in cytoscape.task.ui that implement TaskMonitor

class

JTask Common UI element for visually monitoring task progress.

Uses of TaskMonitor in cytoscape.util

Methods in cytoscape.util with parameters of type TaskMonitor

static void	URLUtil.download(String urlString, File downloadFile, TaskMonitor taskMonitor) Download the file specified by the url string to the given File object
static InputStream	FileUtil.getInputStream(String name, TaskMonitor monitor) DOCUMENT ME!
static List<String>	ZipUtil.unzip(String zipName, String unzipDir, TaskMonitor taskMonitor) Unzips the given zip file and returns a list of all files unzipped

Uses of TaskMonitor in cytoscape.visual.customgraphic

Methods in cytoscape.visual.customgraphic with parameters of type TaskMonitor

void	RestoreImageTask.setTaskMonitor(TaskMonitor taskMonitor) Sets the Task Monitor.
void	PersistImageTask.setTaskMonitor(TaskMonitor taskMonitor) Sets the Task Monitor.

Uses of TaskMonitor in cytoscape.visual.ui

Methods in cytoscape.visual.ui with parameters of type TaskMonitor

void	RedrawTask.setTaskMonitor(TaskMonitor taskMonitor)