Uses of Interface
cytoscape.view.CyNetworkView

Packages that use CyNetworkView

cytoscape	Core Cytoscape Classes.
cytoscape.actions	UI classes that are attached to menu items in the menu or tool bar of the window.
cytoscape.data	Basic data classes used by Cytoscape.
cytoscape.data.readers	Reader classes for the basic data types in cytoscape.data.
cytoscape.data.writers
cytoscape.dialogs	UI classes for performing some action, generally more complicated than those contained in the cytoscape.actions package.
cytoscape.ding
cytoscape.groups
cytoscape.layout	Classes providing some kind of graph layout functionality.
cytoscape.util.export
cytoscape.view	Classes that provide a window to display a graph and UI components connected to that window, such as the menus.
cytoscape.visual	Framework for generalized mappings from graph attributes to visual attributes.

Uses of CyNetworkView in cytoscape

Fields in cytoscape declared as CyNetworkView

protected static CyNetworkView

Cytoscape.nullNetworkView A null CyNetworkView to give when there is no Current NetworkView

Fields in cytoscape with type parameters of type CyNetworkView

protected static Map<String,CyNetworkView>	Cytoscape.networkViewMap
protected static LinkedList<CyNetworkView>	Cytoscape.selectedNetworkViews The list analog to the currentNetworkViewID

Methods in cytoscape that return CyNetworkView

static CyNetworkView	Cytoscape.createNetworkView(CyNetwork network) Creates a CyNetworkView, but doesn't do anything with it.
static CyNetworkView	Cytoscape.createNetworkView(CyNetwork network, String title) Creates a CyNetworkView, but doesn't do anything with it.
static CyNetworkView	Cytoscape.createNetworkView(CyNetwork network, String title, CyLayoutAlgorithm layout) Creates a CyNetworkView, but doesn't do anything with it.
static CyNetworkView	Cytoscape.createNetworkView(CyNetwork network, String title, CyLayoutAlgorithm layout, VisualStyle vs) Creates a CyNetworkView that is placed placed in a given visual style and rendered with a given layout algorithm.
static CyNetworkView	Cytoscape.getCurrentNetworkView() Return the CyNetworkView that currently has the focus.
static CyNetworkView	Cytoscape.getNetworkView(String network_id)
static CyNetworkView	Cytoscape.getNullNetworkView()

Methods in cytoscape that return types with arguments of type CyNetworkView

static Map<String,CyNetworkView>	Cytoscape.getNetworkViewMap() This Map has keys that are Strings ( network_ids ) and values that are networkviews.
static List<CyNetworkView>	Cytoscape.getSelectedNetworkViews() Returns the list of currently selected networks.

Methods in cytoscape with parameters of type CyNetworkView

static void

Cytoscape.destroyNetworkView(CyNetworkView view) Destroys the network view.

Uses of CyNetworkView in cytoscape.actions

Constructors in cytoscape.actions with parameters of type CyNetworkView

AlignHorizontalAction(CyNetworkView networkView)
Creates a new AlignHorizontalAction object.

AlignVerticalAction(CyNetworkView networkView)
Creates a new AlignVerticalAction object.

AnimatedLayoutAction(CyNetworkView networkView)
Deprecated. Creates a new AnimatedLayoutAction object.

EdgeManipulationAction(CyNetworkView networkView)
Creates a new EdgeManipulationAction object.

RotateSelectedNodesAction(CyNetworkView networkView)
Creates a new RotateSelectedNodesAction object.

UnHideSelectedAction(CyNetworkView networkView)
Creates a new UnHideSelectedAction object.

Uses of CyNetworkView in cytoscape.data

Methods in cytoscape.data with parameters of type CyNetworkView

static boolean	CyNetworkUtilities.saveSelectedNodeNames(CyNetworkView networkView, CyNetwork network, String filename) Saves all selected nodes in the current view to a file with the given name.
static boolean	CyNetworkUtilities.selectNodesStartingWith(CyNetwork network, String key, CyNetworkView networkView) Selects every node in the current view whose canonical name, label, or any known synonym starts with the string specified by the second argument.

Uses of CyNetworkView in cytoscape.data.readers

Methods in cytoscape.data.readers with parameters of type CyNetworkView

void	GMLReader.layout(CyNetworkView myView) layout the graph based on the GML values we read
void	GMLWriter.writeGML(CyNetwork network, CyNetworkView view, List oldList) Given an object tree given in oldList, update it with the information provided in network and optional view (if view is not null).

Constructors in cytoscape.data.readers with parameters of type CyNetworkView

GMLTree(CyNetworkView networkView)
Create a GMLTree from the information contained in this GraphView.

Uses of CyNetworkView in cytoscape.data.writers

Constructors in cytoscape.data.writers with parameters of type CyNetworkView

XGMMLWriter(CyNetwork network, CyNetworkView view)
Constructor.
Initialize data objects to be saved in XGMML file.

XGMMLWriter(CyNetwork network, CyNetworkView view, boolean noCytoscapeGraphics)
Constructor.
Initialize data objects to be saved in XGMML file.

Uses of CyNetworkView in cytoscape.dialogs

Constructors in cytoscape.dialogs with parameters of type CyNetworkView

GinyEdgeControlDialog(CyNetworkView networkView, HashMap edgeNamesHash, String title)
Creates a new GinyEdgeControlDialog object.

Uses of CyNetworkView in cytoscape.ding

Classes in cytoscape.ding that implement CyNetworkView

class

DingNetworkView Extended version of DGraphView defined in Ding.

Methods in cytoscape.ding that return CyNetworkView

CyNetworkView

DingNetworkView.getView() DOCUMENT ME!

Uses of CyNetworkView in cytoscape.groups

Methods in cytoscape.groups with parameters of type CyNetworkView

void	CyGroupViewer.groupCreated(CyGroup group, CyNetworkView myView)
static void	CyGroupManager.setGroupViewer(CyGroup group, String viewer, CyNetworkView myView, boolean notify) Set the viewer for a group

Uses of CyNetworkView in cytoscape.layout

Fields in cytoscape.layout declared as CyNetworkView

protected CyNetworkView

AbstractLayout.networkView

Methods in cytoscape.layout with parameters of type CyNetworkView

void	LayoutAdapter.doLayout(CyNetworkView networkView) This method performs the layout on the current network.
void	CyLayoutAlgorithm.doLayout(CyNetworkView networkView) This method performs the layout on the current network.
void	AbstractLayout.doLayout(CyNetworkView nview) doLayout on specified network view.
abstract void	LayoutAdapter.doLayout(CyNetworkView networkView, TaskMonitor monitor) This method performs the layout on the current network, but assumes that the layout is part of an existing monitored task
void	CyLayoutAlgorithm.doLayout(CyNetworkView networkView, TaskMonitor monitor) This method performs the layout on the current network, but assumes that the layout is part of an existing monitored task
void	AbstractLayout.doLayout(CyNetworkView nview, TaskMonitor monitor) doLayout on specified network view with specified monitor.

Constructors in cytoscape.layout with parameters of type CyNetworkView

LayoutTask(CyLayoutAlgorithm layout, CyNetworkView view)
Creates the task.

Uses of CyNetworkView in cytoscape.util.export

Methods in cytoscape.util.export with parameters of type CyNetworkView

void	SVGExporter.export(CyNetworkView view, FileOutputStream stream)
void	PSExporter.export(CyNetworkView view, FileOutputStream stream)
void	PDFExporter.export(CyNetworkView view, FileOutputStream stream)
void	Exporter.export(CyNetworkView view, FileOutputStream stream) Export a view as graphics to a stream.
void	BitmapExporter.export(CyNetworkView view, FileOutputStream stream)

Uses of CyNetworkView in cytoscape.view

Methods in cytoscape.view that return CyNetworkView

CyNetworkView

CyNetworkView.getView() DOCUMENT ME!

Methods in cytoscape.view with parameters of type CyNetworkView

protected void	NetworkViewManager.createContainer(CyNetworkView view) Contains a CyNetworkView.
JInternalFrame	NetworkViewManager.getInternalFrame(CyNetworkView view) Given a CyNetworkView, returns the internal frame.
InternalFrameComponent	NetworkViewManager.getInternalFrameComponent(CyNetworkView view) Given a CyNetworkView, returns the InternalFrameComponent that wraps it.
protected void	NetworkViewManager.removeView(CyNetworkView view)

Uses of CyNetworkView in cytoscape.visual

Methods in cytoscape.visual that return CyNetworkView

CyNetworkView

VisualMappingManager.getNetworkView() DOCUMENT ME!

Methods in cytoscape.visual with parameters of type CyNetworkView

void	VisualMappingManager.applyEdgeAppearances(CyNetwork network, CyNetworkView network_view) Recalculates and reapplies all of the edge appearances.
void	VisualMappingManager.applyGlobalAppearances(CyNetwork network, CyNetworkView network_view) Recalculates and reapplies the global visual attributes.
void	VisualMappingManager.applyNodeAppearances(CyNetwork network, CyNetworkView network_view) Recalculates and reapplies all of the node appearances.
void	VisualMappingManager.setNetworkView(CyNetworkView new_view) DOCUMENT ME!
void	VisualMappingManager.vizmapEdge(EdgeView edgeView, CyNetworkView network_view) DOCUMENT ME!
void	VisualMappingManager.vizmapNode(NodeView nodeView, CyNetworkView network_view) DOCUMENT ME!

Constructors in cytoscape.visual with parameters of type CyNetworkView

VisualMappingManager(CyNetworkView networkView)
Creates a new VisualMappingManager object.